Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61148g00004 ATGGCTTCCGAAGGCTTCACCGACAAGAATGCAGTGTTCCGTAAGCTCAAGTCCAAGCCCGAAAACAAGATGTGTTTTGATTGCAATGCGAAGAACCCAACTTGGGCCTCCGTTACCTACGGGATCTTCCTCTGCATCGATTGCTCCGCTACTCACCGGAGTCTTGGTGTGCACATCAGCTTCGTCAGATCTACAAATTTAGACTCATGGAGTCCTGAGCAGCTAAAAATGATGAGCTTTGGAGGAAATAATCGTGCACACGTTTTCTTTAAGCAGCATGGATGGACTGATGGTGGTAAAATAGAGGCCAAGTATACGTCAAGAGCTGCAGAGTTATATAAAGAAATTCTTTCTAAGGAAGTTGCTAAAAGTATGGCTGAGGAAGCTGCTTCATCATCACCTCCTGTTGATTCTCATTCTGCCCAAGCAACTAATGGACTTCCTGATATAAAGACCAATGGATTACCAAAGGAAAATAATGTAGGGAAGCCTGAAATTCTTGAGAAAACCACTTCACTGCCAAGAACTTCACATACAGTGGTTTCCAGCTCTGTCAAGAAGCCTATTGGTGCTAAAAAACCTGGCAAGAATAGTGGGCTTGGTGCCCGGAAGCTCACGGCAAAGCCAAGTGAGTCCCTTTATGACCAGAAGCCTGAAGAACCCCCTGCTCCAGTACCCACCTCAACAAAAAGCAATTTTTCTGCTGGGCCTTCAACATCTCGGTTTGAGTATGTAGAACATGTCCAACCATCTGAGATGAATTCTGGCGGTGCGGGTACAAATATGAATGGCCATGTTGCTCCACCAAAGTCATCGAACTTCTTTGCAGACTTTGGAATGGACAGTGGTTTTCCTAGGAAATCTGGGCCAAGTCCAACTAAAGTGCAAATTCAAGAATCTGACGAAGCAAGAAAGAAGTTCACAAATGCTAAATCCATTTCTTCCTCCCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGCTGCTCAAGCTACTTTGTCAAAGTTTTCAGGTTCATCTGCCATTTCCAGTGCTGATCTTTTTGGCGACTCATCAGACGGCATTGATCTTGCTGCCAGTGACCTCATCAATCGACTATCTTTCCAGGCACAGCAGGATATCTCTTCCCTTAAAAACATTGCTGGAGAGACTGGGAAGAAGCTAAGCTCCTTGGCCAATACCTTGATGACGGATCTTCAGGACCGGATACTCTAA 1218 0.4499 MASEGFTDKNAVFRKLKSKPENKMCFDCNAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAHVFFKQHGWTDGGKIEAKYTSRAAELYKEILSKEVAKSMAEEAASSSPPVDSHSAQATNGLPDIKTNGLPKENNVGKPEILEKTTSLPRTSHTVVSSSVKKPIGAKKPGKNSGLGARKLTAKPSESLYDQKPEEPPAPVPTSTKSNFSAGPSTSRFEYVEHVQPSEMNSGGAGTNMNGHVAPPKSSNFFADFGMDSGFPRKSGPSPTKVQIQESDEARKKFTNAKSISSSQFFGDQNKAADVAAQATLSKFSGSSAISSADLFGDSSDGIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLANTLMTDLQDRIL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61148g00004 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Stsc61148g00004 405 MobiDBLite consensus disorder prediction 170 184 - -
Stsc61148g00004 405 Pfam Putative GTPase activating protein for Arf 12 111 IPR001164 GO:0005096
Stsc61148g00004 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 405 - -
Stsc61148g00004 405 MobiDBLite consensus disorder prediction 131 149 - -
Stsc61148g00004 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Stsc61148g00004 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Stsc61148g00004 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Stsc61148g00004 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Stsc61148g00004 405 MobiDBLite consensus disorder prediction 126 238 - -
Stsc61148g00004 405 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Stsc61148g00004 405 Gene3D Arf GTPase activating protein 2 141 IPR038508 -
Stsc61148g00004 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Stsc61148g00004 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61148g00004 Stsc-Chr61148 18460 22972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61148g00004 13 91 C2H2 Transcription Factor Family AT4G05330 45.000 4.73e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61148g00004 K12493 K11855 gmx:100789796 604.364