Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61138g00004 ATGGCAACGTACTTTGATGGCGGCAACAATAACAACAACAGCAGTAGTTCAGATATTCATCATCGTAATCATGAATCTTCCGCAGAAGGAGGGGGATTACAGACACTGTTCCTCATGAATCCAAACAACAACTACGTAGCTTTCTCCTCTGACACCGCACAAAATCCAACACCAAACATGATCTTTCTCAATACCAACAATAGTACTACTACTAGTCCCCACGCGCTCAACCTCGCGAGTCTCTCTCACGCGCCACCTCCCCAACAACAACTTATACCCACTGGCAACGAGATCTCTGGCTTCCACGGCTTTGTGGGACCCATGGATGCTCCGCCACGTGTTCATCATCACTATAATTGGGGTTCAATTATAGATCAAGCCTCCCCTTCTTCTGCTGTTGTTGCTGCAACCGTGACTGTTGTTCCGAGTAACAATAATTTAGAGCATACCGTCACGGCTGCTACAACAGCAGAAATGGGACTTCATAGGCCGAGAGGCCATGAATTTCGCCATCATTCACAAGGATTGTCGCTTAGTCTTTCCTCTCGAGAACTTGGTTTGAGAAGTATGCATAGTTTTGTACTGGGTTCCAAGTTTCTGAAAGCGGCGCAGGAGCTTCTAGATGAAGCTGTTAACGTGGGTAATGATGATAATAAAGGGGATTATTATTCCAACAATAAAGAGAAGATGAAAGGGAATAATAATAATAATGTTGAATCCACATCTGGGGTTGTTGGTGGTGGTGATAATGGAGGATCAAGTGGTGGCGGCGGTGAAAATAGTGGTGTTAATAATAATGATATTAACAAGCAAGAAGGAAGTGAACTCAACACTTCTCAAAGACAAGAACTTCAAATGAAGAAGTCCAAGCTTGTTACCATGCTTGATGAGATTGAGCAAAGATACAAAGAGTACAACCAACAAATGCAAATTGTGATGTCATCATTTGAAGAAGCAGCTGGTTATGGAGCTGCAAGGGCATACACATCACTTGCATTGAAGACAATCTCAAAGCAATTCCGGTGCTTGAAGGATGCAATCTCTTTGCAGATCAAGGCAACCGGCAAGGCGCTAGGAGATGGCGATTGCATCGGAGTTAAAGTCGAGGGTTCAAGACTTAGATTCGTCGATCACCATCTCCGGCAACAAAGGGCACTTCAGCAACTCGGAATGGTACAACACAATGCTTGGAGACCACAGAGAGGGCTGCCTGAACGAGCTGTTTCTATTCTTCGAGCTTGGCTTTTTGAGCACTTTCTTCACCCATATCCAAAGGACTCCGACAAGGTTTTGCTTGCAAAACAAACCGGACTTACTCGGAGCCAGGTATCAAACTGGTTTATAAATGCCCGAGTTAGGCTATGGAAACCAATGGTTGAAGAAATGTACTTAGAAGAAATCAAGGATCAAGAACACAACAACAACAACAATGAAAATGATGATGACATTGACACCACCAAGAAGAAGAAGAAGAAGCTAATAAGAGAATCATCATCAAACAATAATGAATTATGGTCATCATCATCATCACAATTAGAACACCCATCATCTAGTAGTGCCATTAGACTTGATCACTTAAACACCAACAACCAAAACATTGCTACTCCAACAACTCAGATCGCACCAAACTACTCCAACAACAATCCAAGGAATAATCCTCATCACGAGATCATGAACTCTCCAGGTAGCATCCTTTCGGTGGACATGGAAATGAAGCCTATAAGGGAGACTAATAGCAACATAGAACCCAACAACAACAATATAAAGTTTGGAATTGAATTAAGGAACGCTAATAAAGACGGTTACCCTTTGATGGCTTCTTTTGGAAATGAAAACCACGGCGGCAGCAGTGGCTATGGTGGCAGTGCATTCTCCATGGAAGACATTGGAAGGTTCCATCAACAATTGGTGGCTCCAAGGTTCCATGGGAATGGTGTTTCACTCACTCTAGGGCTTCCACCAAGTGAGAACAACAACTTTCAATCGCAACAAGGGTTTCTCTCTTCACAGAACATGCATTTGGGAGGAGGAGGAGGGAAGATTCATCATCATCATCATAATCACGAGACTGGAGCAGCAACCAATAATAATTATGATGATGATGAGTTTTGTGGAATCAAGAAGAGTGGCACAACACCTTCTTCTCATTCAGGGACAAGCTATGATCATAACAACAACATTATTGACATGCAAAACAGCAAGAGATGA 2208 0.4293 MATYFDGGNNNNNSSSSDIHHRNHESSAEGGGLQTLFLMNPNNNYVAFSSDTAQNPTPNMIFLNTNNSTTTSPHALNLASLSHAPPPQQQLIPTGNEISGFHGFVGPMDAPPRVHHHYNWGSIIDQASPSSAVVAATVTVVPSNNNLEHTVTAATTAEMGLHRPRGHEFRHHSQGLSLSLSSRELGLRSMHSFVLGSKFLKAAQELLDEAVNVGNDDNKGDYYSNNKEKMKGNNNNNVESTSGVVGGGDNGGSSGGGGENSGVNNNDINKQEGSELNTSQRQELQMKKSKLVTMLDEIEQRYKEYNQQMQIVMSSFEEAAGYGAARAYTSLALKTISKQFRCLKDAISLQIKATGKALGDGDCIGVKVEGSRLRFVDHHLRQQRALQQLGMVQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVLLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEHNNNNNENDDDIDTTKKKKKKLIRESSSNNNELWSSSSSQLEHPSSSSAIRLDHLNTNNQNIATPTTQIAPNYSNNNPRNNPHHEIMNSPGSILSVDMEMKPIRETNSNIEPNNNNIKFGIELRNANKDGYPLMASFGNENHGGSSGYGGSAFSMEDIGRFHQQLVAPRFHGNGVSLTLGLPPSENNNFQSQQGFLSSQNMHLGGGGGKIHHHHHNHETGAATNNNYDDDEFCGIKKSGTTPSSHSGTSYDHNNNIIDMQNSKR 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61138g00004 735 Coils Coil 281 315 - -
Stsc61138g00004 735 SMART HOX_1 397 461 IPR001356 GO:0003677
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 668 696 - -
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 498 518 - -
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 709 735 - -
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 1 17 - -
Stsc61138g00004 735 SUPERFAMILY Homeodomain-like 398 463 IPR009057 -
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 467 518 - -
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 1 29 - -
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 214 285 - -
Stsc61138g00004 735 Gene3D - 400 462 - -
Stsc61138g00004 735 SMART prehox3 188 349 IPR006563 -
Stsc61138g00004 735 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Stsc61138g00004 735 FunFam BEL1-like homeodomain protein 9 400 462 - -
Stsc61138g00004 735 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 467 497 - -
Stsc61138g00004 735 CDD homeodomain 397 458 IPR001356 GO:0003677
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 227 285 - -
Stsc61138g00004 735 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 490 - -
Stsc61138g00004 735 MobiDBLite consensus disorder prediction 533 554 - -
Stsc61138g00004 735 Pfam Associated with HOX 194 348 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61138g00004 Stsc-Chr61138 18583 26978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61138g00004 1 669 Homeobox Transcription Factor Family AT2G35940 39.631 5.47e-113 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc61138g00004 POX 1.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61138g00004 - - aip:107629786 682.174