Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61138g00001 ATGGCAGAAATTGAGATTCCCGAATATTTTCTATGCCCAATTTCGCTTCAGATGATGAAGGAGCCTGTAACTGCCATAACAGGCATAACATACGAAAGAGAAAGCATTGAGCAATGGCTGATGAAGGCCAAAGACTGCGTTTGCCCCGTTACCAAGCAGCCATTGCCGCGAAGCTCGCAATATTTGACCCCAAATCACACTCTAAGGAGATTGATTCAGGCCTGGAGTGATGCAAATATTATTAATGGTGGTGGTGGTGTTCATGAACAGGTTCCGGCGAATCCGATTCCGGCTCTTGAGAAGGTGCATTATGTTGAGAAGCTCGTGAAGGATCTTAAGGTTCCTCGTAGGAATGAAAGAGCGTTGGAGAAGTTGCATGGTTTTGCCATGGAAAGTGAGAGGAATAGAACTTGCATTGCTGAGGCTGGTGTAGCTAATGCCATGGTTATGCTCATTAACCAGAGTTTCAAACAAGGGAAGACGATGATGTGCCTAGAAGAAGCTCTAACAATTCTTCATGTTACATGGAATATACCATGCAGGACCAACATGAAGGCTCTTGTTGGAGAAAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGAACAACAACAATAATGTCAAGATAGTAAACCAAGCAATGCCCTTATTGAAGTTGACAATTGAAAACACAAACCCAACGATCTTAGGGAACTTGAACTTCGAATTCTTCAAGGAAATGGTGAGAGTATTGGGAAAAAGAGCAATATCTCAACAAGCCCTAAAATCCACCTTGCAAATCCTCATGGAAACATGCCCTGTGGGTAAAAACCGAAAGAGGATTGCCGAATCGGGTGCGATTACAGAACTAATCGAACTTGAACTCGAAAAACCGGAGAAAAACTTTTCGGAACTTATATTCAACCTTCTAGCACATCTATGTTCATGTGCTGAAGGTAGAGAAATGTTTCTTAAACATGCCGCAGCGATAGCCATGGTTTCTAAGAGGATTCTTAGGGTTTCTTCCGCCACGGATGATCGAGCGGTGCACATTTTATTGATGATTGGAAAGTATTCTGGATCCAATGACATTGTTCTTGAGATGCTTAGGGTTGGTGCAGTGTCCAAGCTTTGCATGGTGATGCAAGCAGATTGTGCATCTTATTTGAAAGAGAAAGCAAGAGAGATACTTAGGTTGCATTCCAAAGTTTGGAGTAACTCACCTTGCATACAAGTTTACTTGTTAACTAGGTACCAAAGGTGA 1245 0.4225 MAEIEIPEYFLCPISLQMMKEPVTAITGITYERESIEQWLMKAKDCVCPVTKQPLPRSSQYLTPNHTLRRLIQAWSDANIINGGGGVHEQVPANPIPALEKVHYVEKLVKDLKVPRRNERALEKLHGFAMESERNRTCIAEAGVANAMVMLINQSFKQGKTMMCLEEALTILHVTWNIPCRTNMKALVGENLDFINSLTWILNNNNNVKIVNQAMPLLKLTIENTNPTILGNLNFEFFKEMVRVLGKRAISQQALKSTLQILMETCPVGKNRKRIAESGAITELIELELEKPEKNFSELIFNLLAHLCSCAEGREMFLKHAAAIAMVSKRILRVSSATDDRAVHILLMIGKYSGSNDIVLEMLRVGAVSKLCMVMQADCASYLKEKAREILRLHSKVWSNSPCIQVYLLTRYQR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61138g00001 414 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Stsc61138g00001 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Stsc61138g00001 414 Gene3D - 75 403 IPR011989 -
Stsc61138g00001 414 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Stsc61138g00001 414 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Stsc61138g00001 414 PANTHER WDSAM1 PROTEIN 3 405 IPR045185 GO:0061630
Stsc61138g00001 414 CDD RING-Ubox_PUB 7 58 IPR045210 -
Stsc61138g00001 414 SUPERFAMILY RING/U-box 4 78 - -
Stsc61138g00001 414 SUPERFAMILY ARM repeat 120 391 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61138g00001 Stsc-Chr61138 6674 8691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61138g00001 3 412 U-box Gene Family AT2G35930 39.614 2.26e-91 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61138g00001 - - gmx:100811293 515.768