Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61136g00001 ATGGGCGCCGTTGTTGACTGTTATCCGCCGCACGCCGGCGAAGTTGCCGTGTTGTCCCTCAATTCGCTTCCTTTAGGGTTCCGATTTCGACCTTCTGATGAGGAGCTTGTTGATTATTATTTGAGACAGAAGATAAACGGAAACGGAGAAGAGGTCTGGGTTATTCGAGAAATCGATGTTTGCAAATGGGAGCCTTGGGATTTGCCAG 208 0.4904 MGAVVDCYPPHAGEVAVLSLNSLPLGFRFRPSDEELVDYYLRQKINGNGEEVWVIREIDVCKWEPWDLP 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61136g00001 69 Gene3D NAC domain 32 69 IPR036093 GO:0003677|GO:0006355
Stsc61136g00001 69 SUPERFAMILY NAC domain 17 69 IPR036093 GO:0003677|GO:0006355
Stsc61136g00001 69 ProSiteProfiles NAC domain profile. 23 69 IPR003441 GO:0003677|GO:0006355
Stsc61136g00001 69 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 23 68 - -
Stsc61136g00001 69 Pfam No apical meristem (NAM) protein 24 69 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61136g00001 Stsc-Chr61136 157 677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61136g00001 9 69 NAC Transcription Factor Family AT1G33060 68.852 1.65e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc61136g00001 NAM 4.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61136g00001 - - gmx:100778903 125.176