Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61130g00001 ATGGGTCTTAGAGATATTGGAGCTTCATTGCCACCTGGGTTTCGGTTCTATCCAAGTGATGAAGAATTAGTTCTTCACTATCTTTACAAGAAGATCACAAATGAGGAAGTTCTCAAGGGTACTTTGATGGAAATTGATTTGCACACATGTGAGCCATGGCAGCTTCCTGAGGTGGCTAAGCTCAATGCAAATGAGTGGTACTTCTTCAGCTTCCGTGACCGCAAATACGCAACCGGCTTTCGCACCAATCGCGCCACGACATCTGGCTATTGGAAAGCCACTGGAAAGGATCGAACGGTTCTCGATCCGATCACACGCGAGGTCGTAGGGATGAGGAAGACATTGGTGTTCTACAGGAATAGAGCCCCAAATGGCATCAAAACTGGTTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCACCTAAGGAGGATTGGGTTTTGTGTAGAGTGTTTCATAAGGGCAAAACAGAGAATAGTGCCAAACTAAGCCCACAATTCATGTATGAGGCCACACCTTCATCCCTAACTTTGGCTTCATCATCATCATCGCCACCAACAAACCACACCAATTGCAATTTGCATGTTATTGGGTATAACCAACTTCCCAATTTCTCATCATCATCATCACCAATGGCAATCCACCATAATCATCATCATCATCATCAAAACCAAAACGGTTCCTCCTCTTTGATGAATCTCCTTCAATTTTCCACTAAGGAAAATAGCACCATTACTCAAGTAAGTCCCAAAAGCGGCGGCGGCGGCGGCTGTTGCGACGACGGCGGATATGGTGGGTTCATGTGGGACATGGACCTTGAGGAAACTAGCTTCCATGATGGTGGGGTTATTGCATCAAACTTGAATGACATGAGATTTGAGGTTGATAACAATACCATGGTTATGTTGTAG 918 0.4542 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENSAKLSPQFMYEATPSSLTLASSSSSPPTNHTNCNLHVIGYNQLPNFSSSSSPMAIHHNHHHHHQNQNGSSSLMNLLQFSTKENSTITQVSPKSGGGGGCCDDGGYGGFMWDMDLEETSFHDGGVIASNLNDMRFEVDNNTMVML 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61130g00001 305 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Stsc61130g00001 305 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Stsc61130g00001 305 MobiDBLite consensus disorder prediction 210 229 - -
Stsc61130g00001 305 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Stsc61130g00001 305 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Stsc61130g00001 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61130g00001 Stsc-Chr61130 18204 24601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61130g00001 6 156 NAC Transcription Factor Family AT1G56010 58.491 1.57e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc61130g00001 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61130g00001 - - gmx:100783645 426.017