Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61129g00002 ATGGCTAATATCGCTATCGTCTTTGGTGGTGGTGGTGTTGGGGTTGCAGCACTACTACCTCTATCTCCGTTTCCGTCATTACCCCTTTCAAATTCTCCCCTTTTTCCACAAAGACGCAAACTTTTCCTTAATTGCTCCAAAACCAACCAGATAACAACCCTTTTCCCTTCTCCTCCACCTTCTTCTCCATCACCATTCGGCAACAAAGGTCGTTGCTTTGTGTTAGCATGTCTCCCACAACCACATGATTCTGATTCGTCATCATCAACTTCTTCTAATTCCAATAATAAGCCAAGTTCTTCTTCTGCCGCTCCTTCTCCTTCAACTAAGCTCTATGTTAGTGGGTTATCTTTTCGAACCACTGAAGAAAGCTTGCGAAATGCATTTCAGAATTTTGGTCAACTTTTAGAAGTGAATTTGGTAATGGATAAAATTGCAAACAGACCAAGAGGGTTTGCATTTCTTAGATATGCAACTGAACAGGAATCTCAGAAGGCTATCGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAACTAAGGCAAAGACAAAACACTAGATACTAG 600 0.4167 MANIAIVFGGGGVGVAALLPLSPFPSLPLSNSPLFPQRRKLFLNCSKTNQITTLFPSPPPSSPSPFGNKGRCFVLACLPQPHDSDSSSSTSSNSNNKPSSSSAAPSPSTKLYVSGLSFRTTEESLRNAFQNFGQLLEVNLVMDKIANRPRGFAFLRYATEQESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRQNTRY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61129g00002 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Stsc61129g00002 199 MobiDBLite consensus disorder prediction 83 108 - -
Stsc61129g00002 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 180 IPR000504 GO:0003723
Stsc61129g00002 199 Gene3D - 79 199 IPR012677 -
Stsc61129g00002 199 SUPERFAMILY RNA-binding domain, RBD 99 197 IPR035979 GO:0003676
Stsc61129g00002 199 PANTHER NUCLEOLAR PROTEIN 8 96 195 - -
Stsc61129g00002 199 SMART rrm1_1 110 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61129g00002 Stsc-Chr61129 20028 23584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61129g00002 100 199 Eukaryotic Initiation Factors Gene Family AT4G34110 28.000 3.77e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61129g00002 - - ahf:112802436 256.144