Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61129g00001 ATGGAGATGCAGGACCAAATCGAAGGCACAAAGATAAGCAAGTCTGGCACAGCTAGTGATGGCCATTCCAATGATGGATCACAATCCCAATCGCCGGATATAAGTTCTGTTGGGAACAATCATGCCCCCAAGGCAAGAAAACCATATACAATCACTAAGCAAAGGGAGAAGTGGACTGAGGAAGAGCATGAAAAGTTCCTTGAAGCTTTGAAGTTGTATGGTCGGGGCTGGCGTCAAATTGAAGAGCATATAGGCACCAAAACTGCTGTTCAGATTCGAAGCCATGCACAAAAGTTTTTCTCTAAGGTTGTGCGGGAATCTGATGGAACTGCTGAAAGTTCTATACAACCAATTGACATACCTCCTCCTCGTCCTAAAAGGAAACCCCTTCATCCATACCCCCGTAAATCGGCTAACTCTTTCAAAAAACACACCATATCCAATGAACCAGAAAAATCTCCATCTCCAAATCTGTCCTCTGTGGGGAAAGACTCTCAATCTCCAACCTCCGTGCTATCTGCCTTTGGTTCGGAAGCGTTTGGGTCAGCATTTTCAGAGCAGACCAACAGATGTCTTTCTCCAAATTCTTGCACCACTGACATTCACTCAATCAGCTTGTCACCTATTGAGAAGGAAAATGATTGCATGACATCTAAACCATCCGAGGAGGAAGACAAAGGGTCTCTAGCTTCTGTCCTTTTATCCATAAATTCAAAACCTATCTTGCCCATGAAGCCTGAGAAGTTGGAGTTATGTTCCAAGCAATCCAAGTGTTCCGACAATGATGTTGCCAATGTCCTACCAGCTACGATTAAGCTGTTTGGAAGAACTGTCTCTATGGTGGTTAATCAGGAGGCAATTAATACTGAAAAGGAATGTGTTAAGCCATATACTACTAGGTCTGACGAAGTAGACGTTGTTGCAAATGAGAAGCAATTGGATACACAGTTATCACTAGGTCTGTGTAATGGAAAAGTAATGCCTAAAGAAGATAAAGTGACACGGATGGAACATCTGAAGCAGGACCTTTGCGTTGGAGAATCTGCACCTGAAGCATCTTTGCCATGGTGCAGTTTGTTCCAAGGAGTTCCGCCTGCTTACTTTGGTTCATCCAGCACAGTCCTAAATCCCGTGCCTCTTCGCCCCTCTTTGAAGGTAAGAACTAGAGAGGGAGAGGGTTCTTGTACTGGTTCCAGTGGTGAATCGATCAATGATGTGGAAATTCAGGACAAGATACGGGGCAGGTCGGACGCTGTCGATTCCAGGTGTCAACAAACATCTCATGAAGAGAGAGAATTAGAGAAGTCTCCGAGGGGTTTTGTACCATACAAAAGATGTTTATCTGAAAGAGATGCAGGTTCTTTGATTGTTGCATTGGAAGAAAGGAAGGGGCAAAGAGCTAGGGTGTGCTCATAG 1416 0.4435 MEMQDQIEGTKISKSGTASDGHSNDGSQSQSPDISSVGNNHAPKARKPYTITKQREKWTEEEHEKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGTAESSIQPIDIPPPRPKRKPLHPYPRKSANSFKKHTISNEPEKSPSPNLSSVGKDSQSPTSVLSAFGSEAFGSAFSEQTNRCLSPNSCTTDIHSISLSPIEKENDCMTSKPSEEEDKGSLASVLLSINSKPILPMKPEKLELCSKQSKCSDNDVANVLPATIKLFGRTVSMVVNQEAINTEKECVKPYTTRSDEVDVVANEKQLDTQLSLGLCNGKVMPKEDKVTRMEHLKQDLCVGESAPEASLPWCSLFQGVPPAYFGSSSTVLNPVPLRPSLKVRTREGEGSCTGSSGESINDVEIQDKIRGRSDAVDSRCQQTSHEERELEKSPRGFVPYKRCLSERDAGSLIVALEERKGQRARVCS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61129g00001 471 MobiDBLite consensus disorder prediction 140 170 - -
Stsc61129g00001 471 CDD SANT 57 100 IPR001005 -
Stsc61129g00001 471 MobiDBLite consensus disorder prediction 415 436 - -
Stsc61129g00001 471 ProSiteProfiles SANT domain profile. 53 104 IPR017884 -
Stsc61129g00001 471 NCBIfam myb-like DNA-binding domain, SHAQKYF class 53 102 IPR006447 GO:0003677
Stsc61129g00001 471 PANTHER SWI/SNF COMPLEX-RELATED 28 247 - -
Stsc61129g00001 471 MobiDBLite consensus disorder prediction 1 61 - -
Stsc61129g00001 471 MobiDBLite consensus disorder prediction 8 38 - -
Stsc61129g00001 471 MobiDBLite consensus disorder prediction 105 170 - -
Stsc61129g00001 471 Pfam Myb-like DNA-binding domain 55 98 IPR001005 -
Stsc61129g00001 471 FunFam protein REVEILLE 6 isoform X1 57 105 - -
Stsc61129g00001 471 Gene3D - 57 104 - -
Stsc61129g00001 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 104 IPR017930 -
Stsc61129g00001 471 ProSiteProfiles Myb-like domain profile. 50 100 IPR001005 -
Stsc61129g00001 471 SUPERFAMILY Homeodomain-like 49 103 IPR009057 -
Stsc61129g00001 471 SMART sant 54 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61129g00001 Stsc-Chr61129 15664 19782 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc61129g00001 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61129g00001 - - gmx:778089 548.51