Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61120g00005 ATGGCTGCTGAACTTGTTGGAGGAGCTTTTCTCTCTTCTTTTCTCAATGTTCTCTTTGACCGGCTCTCTGATCCTGCCATCATCAACATGATGCGAGGAAAGAAGGTTGACCAGAAGCTGCTTCAAAGGTTGAAGACCATTCTGAACGTGGTTGAAGCTGTGCTGAATGATGCTGAGAAGAAACAGATCACTGACTCTGCTGTCAAGAGGTGGCTTGAAGATCTCCAAGATGCCGTCTATGATGCTGATGACTTGTTGGATGAAGTTGCCACTAAGGCTGCCACTCAGAGGGATCCACCAGGTAACTTCCTGTCTCGCTTAATCAATTTGCAAGATAGGGAGATGGTTGCTAGGATTGAAGAAATCATTGCTAGACTTGATGATATTGCAAAGCACAAAGATATCCTTGGTCTAGAAAAGATTTCAGTGAAGAACATGTCAGGGAGAATTGAATCAACATCTCTTGTTCAAAAATCTGATGTATTTGTTGGTAGGGACCAAGACAGGGAGGATATAGTCAAATTGCTGTTAGATGATGCTAGTGATGCTGAACTTTCTGTGATCCCGATCTGGGGCATGGGTGGGATTGGAAAAACTACTTTGGCTAAGCGGGTTTTTAATGATGATAGAGTGCAGCAAAAATTTGATGTCAATGCATGGGTTTGTGTTGGGGAAGAATTTGATGTTCTTAAAGTGGCAAAGGCTGTAATAGAGGAAATAACTTCTGGTCCTTGTGGCATGAATAGCTTGAACTCAGCTCAACAACATTTAAGGAGTAAGCTCACAGGGAAGAAATTCTTGGTTGTTTTGGATGATATGTGGAGTAACCGTTACTCTACTTGGGAAAATTTTCTAGTTCCTTTTAAATGTGGAAGCGAGGGAGGTAAGATCCTTGTAACAACTCGTGACGAGAGGATTGCAAAAATGGTGAAAAGTTTTCATTGTCAAGCCCACAATTTGAGTGCTTTGAATGATGAAGATTGTTGGGCGGTGTTTGCAAATCATGCATTTCTTTCTGGAGAGCGTCTAGCTTTCGAAAAAGTTGGCAGAGAAATTGTTAAGAAGTGCAAAGGGTTACCTCTAGCTGCTCAAACACTTGGGAGCTTATTAAGGTCCAAGGATAATGAAAGGGATTGGAATAATGTTTTGAACAGTGAAATTTGGGAGTTTTCTGAAGAGCAAATTCAAATTCTTCCTGCGCTGAGGATCGAGGGTTTTCTGCAACGACCAAAGGCTGGAAGCACTTTAGAAGAAGTTGGCTATGAATATTTTGATGAGTTAGCTTCAAGATCATTTTTTCAACCTTCTTATAATCCCTATAGTAATTCATTTGTGATGCACGACCTCATGCATGATTTAGCGACATTCTATGGTGAAAAGTTCTATTTTAGAACCTTTGAAGTCAAGAATGTGCTGAAGCATGATGCCAAAACTCGTCATTTGTCCTATGTTCTTGGCAACAACAATTCAATCTCAAATATCCAAGAAGTATGTGATAGTTTAAGGCATGCAAGGACATTGCTGCAAATCAACTTGTATACACATCATGGATTATCAGAGGGAATACTCGATCCTTGTCAATTACTAGAACAACTGAAGTGCTTTCGAGTTTTGTCATTTAAATTCTTTTCTCGTGAGGAAGGCTTGTTGCATGATTCAATTGGTGAATTGATCCATTTACGTTATTTAGATCTCTCTTTCACACCTGTCATGACATTGCCCGAGTCATTGGGTAATTTGTACAATTTACAAACGTTGAAGTTGAGACACTGCAGAAATCTTAAAAAGCTTCCCACCAACCTGCAAAATCTTGTGAATTTGCGTCATCTTGATACTCAACACACTTTACTAGAAGAGATGCCAAAAGGGATGAGCAAATTACAAGATTTGCAATTTTTAAGTTACTATATGGTGGGGAAGCGTGAAGAAAATGGAGTTGGGGAATTGGGAGAACTAGCACATCTTCATGGCTCATTGAGTATTCAGAAATTAGAGAATGTTAAGAATAGTGGTGAAGCATCGAATGCAAGGATGGATGAAAAAATACACCTGGATACTTTGTATTTGAGTTGGTCATCATTTGAAGAAAGTGAGGTTTGTGATTCCCAAACTGAAAAAGATGTACTTGACAAATTACATCCTCACAAAAAGCTGAAAGAGCTAGGGATCTTTGGTTACAGAGGTACGATGTTTCCGGATTGGCTAGGGCACTCTTCGTACCACAACATGACTAACTTGTGGCTGGTTGGATGCAAGAATTGTTGGGTGGTTCCTTCACTTGGACAGTTACCCTCTCTCATGGAATTGATGCTTCAAGGATTTGATATGGTGAAGAAGATTGGTGCTGAATTCTATAAGGCTGATGGAACTCATCATCATCATCAGGTGACACCCTTCCCATCCCTTAAAACTCTAAAAATTGAAAGAATGCCTTGCTGGGAGGAATGGGAGTCATATGAATGTGATGATGATGATCATGCACCATTTCCTCAACTTGAGAAACTTATGATATATAACTGTCCAAAGTTAAGAGGAGATTTGCCCACTTTCCTTCCGTCTTTGAAGGATCTTTGGATTGAAGGATGCTCAGAGCTTGGTTGTTATCTGCCAAGAGCACCCATCATACGCGAGTTAAGAATACATGGCAAACAGGAAGCAAGAATGCGGGAGTTATCACTTTCCATGTTGGAGACACTAATTATTAATGGAGAGGAGCAGGTGGAGTATGTGTTTGATGCCATGACCCACACCCAACCAACCTCTCACACATTCCTACATATCTCAAACTGCTCATCAGTGGTATCATTTGCAGGGGATTCCTTGCCTCCTTCATTGCAACACCTTTACATCTAA 2853 0.4045 MAAELVGGAFLSSFLNVLFDRLSDPAIINMMRGKKVDQKLLQRLKTILNVVEAVLNDAEKKQITDSAVKRWLEDLQDAVYDADDLLDEVATKAATQRDPPGNFLSRLINLQDREMVARIEEIIARLDDIAKHKDILGLEKISVKNMSGRIESTSLVQKSDVFVGRDQDREDIVKLLLDDASDAELSVIPIWGMGGIGKTTLAKRVFNDDRVQQKFDVNAWVCVGEEFDVLKVAKAVIEEITSGPCGMNSLNSAQQHLRSKLTGKKFLVVLDDMWSNRYSTWENFLVPFKCGSEGGKILVTTRDERIAKMVKSFHCQAHNLSALNDEDCWAVFANHAFLSGERLAFEKVGREIVKKCKGLPLAAQTLGSLLRSKDNERDWNNVLNSEIWEFSEEQIQILPALRIEGFLQRPKAGSTLEEVGYEYFDELASRSFFQPSYNPYSNSFVMHDLMHDLATFYGEKFYFRTFEVKNVLKHDAKTRHLSYVLGNNNSISNIQEVCDSLRHARTLLQINLYTHHGLSEGILDPCQLLEQLKCFRVLSFKFFSREEGLLHDSIGELIHLRYLDLSFTPVMTLPESLGNLYNLQTLKLRHCRNLKKLPTNLQNLVNLRHLDTQHTLLEEMPKGMSKLQDLQFLSYYMVGKREENGVGELGELAHLHGSLSIQKLENVKNSGEASNARMDEKIHLDTLYLSWSSFEESEVCDSQTEKDVLDKLHPHKKLKELGIFGYRGTMFPDWLGHSSYHNMTNLWLVGCKNCWVVPSLGQLPSLMELMLQGFDMVKKIGAEFYKADGTHHHHQVTPFPSLKTLKIERMPCWEEWESYECDDDDHAPFPQLEKLMIYNCPKLRGDLPTFLPSLKDLWIEGCSELGCYLPRAPIIRELRIHGKQEARMRELSLSMLETLIINGEEQVEYVFDAMTHTQPTSHTFLHISNCSSVVSFAGDSLPPSLQHLYI 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61120g00005 950 Coils Coil 41 61 - -
Stsc61120g00005 950 SMART LRR_typ_2 604 627 IPR003591 -
Stsc61120g00005 950 SMART LRR_typ_2 557 580 IPR003591 -
Stsc61120g00005 950 Gene3D - 15 128 - -
Stsc61120g00005 950 PANTHER DISEASE RESISTANCE PROTEIN RP 52 840 IPR044974 GO:0006952
Stsc61120g00005 950 Pfam NB-ARC domain 169 384 IPR002182 GO:0043531
Stsc61120g00005 950 FunFam Probable disease resistance protein At1g61300 126 314 - -
Stsc61120g00005 950 Gene3D - 141 315 IPR027417 -
Stsc61120g00005 950 Pfam Rx N-terminal domain 10 101 IPR041118 -
Stsc61120g00005 950 PRINTS Disease resistance protein signature 578 594 - -
Stsc61120g00005 950 PRINTS Disease resistance protein signature 356 370 - -
Stsc61120g00005 950 PRINTS Disease resistance protein signature 187 202 - -
Stsc61120g00005 950 PRINTS Disease resistance protein signature 260 274 - -
Stsc61120g00005 950 Gene3D - 322 398 IPR042197 -
Stsc61120g00005 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 399 IPR027417 -
Stsc61120g00005 950 Gene3D Ribonuclease Inhibitor 472 878 IPR032675 -
Stsc61120g00005 950 SUPERFAMILY L domain-like 445 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61120g00005 Stsc-Chr61120 23613 27297 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61120g00005 184 373 WRKY Transcription Factor Family AT5G45050 28.718 1.86e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61120g00005 - - ahf:112730660 1518.44