Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61120g00004 ATGGCTTTCAAGAAATTCTCCATTCTCATCAATCTCTTTGTATCTTATTTTCTTCCCTTCTTCTTGTTAATGACATCTTTGTCCCTAGCACAAGATGACCATGAATCCATTTGCCAATCAACAATAGACCCTTCTTATTGCAAGAACATGCTTGCAAATCAAAATGGCAACAACAACAACATATATGACTATGGCCGTTTCTCATTCCAAAAATCAATATCCCAAACCCAAAAATTCCTAACCCTAGTTAACTCTTATCTCCAAAACACAAACACTTTGTCACAACCCACAATTGGGGCACTCCAAGATTGCTCCTTTCTCTCTCAACAAAGCTTAGAGTATTTATCAAACACCTTCACCACAATCAATCAAACTAGCAATAGTGATAATCTTCTTCCATCTTCACAAGCTGAAGATTTTCAAACAATTCTTAGTGCGGTTGTGACAAACCAACAAACTTGCTTAGAGGGTTTATCACAAACCTCTTTTGATCAAGATTTGAAGAATGAACTATCTTCATCACTATCCAATGACACAAAACTCCATAGTGTTTCCCTAGCTTTGTTCAACAAAGCTTGGGTGCCAAGCAAGAAAACCCTAACATCATGGCCAAAAAACAAGCACAACTTCAATTTCCACAATGGTAATCTACCATTGAAGATGTCCAAGAAAGCTCAAGAAATTTATGATCATGCCAAGAATAAGCATGGGAGGAAATTGCTCCAAAATAACGCAGACGGTGGCGGCGATGATGGAGGTGTTTTGGTGAGTGATATTGTGGTTGTGAGCCAAGATGGGAGTGGAAACTTTACAAATATAAATGATGCAATTCGTGCAGCACCAAATAATAGTGTTGCTAGTGATGGATACTTCTTTATCTTTGTAAGTGAAGGTGTGTATGAAGAGTATGTTTCCATTGATAAGACCAAGAAGTACCTTATGATGGTTGGTGAAGGGATTAACCAAACAATCATAACTGGTAGTCACAATGTTGTTGATAATTTCACAACATTCAATTCCGCAACATTTGCTGTGGTGGGTCAAGGGTTTGTGGCAGTAAACATAACATTCCGCAACACTGCTGGACCAAGCAAGCACCAAGCAGTTGCATTAAGAAGTGGTTCAGATTTATCCATCTTCTATAGTTGCAGCTTCGAAGGATATCAAGACACACTTTACACGCATTCTCTTAGACAATTTTATAGAGAGTGTGATATTTATGGTACAGTTGACTTCATATTTGGTAATGCTGCCGTGGTCTTTCAAGATTGTAATATCTATCCGCGCCTTCCTATTAAAGGACAATTTAATGCCATCACTGCACAAGGAAGAACCGATCCAAATCAAAACACAGGAACTTCAATTCAGAATGCAATCGTTAAACCTGCGGACGATTTGGCGCCAAATGTTGGAAGCGTTCAAACGTACCTTGGGAGGCCATGGAAGCAATATTCAAGGACAGTGTTCATGGAATCATCTATTGATGGTTTCATAAACTCAGCAGGTTGGCATGAATGGAGTGGTGATTTTGCACTTAGCACATTGTACTATGCTGAATTTAACAACACTGGGAATGGCTGTGACACTTCTAACCGTGTTACATGGCCTGGTTTTCATGTTATTGTTAATTCTACTGATGCTGCTGCTTTCACTGTTTCTAATTTCTTGAGTGGGGATAATTGGATCCCTCAAGCTGGTGTTCCATATTTGAGTGGATTAAATAATTGA 1728 0.3883 MAFKKFSILINLFVSYFLPFFLLMTSLSLAQDDHESICQSTIDPSYCKNMLANQNGNNNNIYDYGRFSFQKSISQTQKFLTLVNSYLQNTNTLSQPTIGALQDCSFLSQQSLEYLSNTFTTINQTSNSDNLLPSSQAEDFQTILSAVVTNQQTCLEGLSQTSFDQDLKNELSSSLSNDTKLHSVSLALFNKAWVPSKKTLTSWPKNKHNFNFHNGNLPLKMSKKAQEIYDHAKNKHGRKLLQNNADGGGDDGGVLVSDIVVVSQDGSGNFTNINDAIRAAPNNSVASDGYFFIFVSEGVYEEYVSIDKTKKYLMMVGEGINQTIITGSHNVVDNFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGSDLSIFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNIYPRLPIKGQFNAITAQGRTDPNQNTGTSIQNAIVKPADDLAPNVGSVQTYLGRPWKQYSRTVFMESSIDGFINSAGWHEWSGDFALSTLYYAEFNNTGNGCDTSNRVTWPGFHVIVNSTDAAAFTVSNFLSGDNWIPQAGVPYLSGLNN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61120g00004 575 SMART PMEI_2 29 188 IPR006501 GO:0004857
Stsc61120g00004 575 Pfam Plant invertase/pectin methylesterase inhibitor 35 188 IPR006501 GO:0004857
Stsc61120g00004 575 FunFam Pectinesterase 35 191 - -
Stsc61120g00004 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 192 IPR035513 -
Stsc61120g00004 575 Gene3D - 258 575 IPR012334 -
Stsc61120g00004 575 PANTHER PECTINESTERASE 23 563 - -
Stsc61120g00004 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 191 IPR035513 -
Stsc61120g00004 575 Pfam Pectinesterase 260 559 IPR000070 GO:0030599|GO:0042545
Stsc61120g00004 575 SUPERFAMILY Pectin lyase-like 256 572 IPR011050 -
Stsc61120g00004 575 FunFam Pectinesterase 254 573 - -
Stsc61120g00004 575 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Stsc61120g00004 575 CDD PMEI-like_3 36 193 - -
Stsc61120g00004 575 NCBIfam pectinesterase inhibitor domain 13 191 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61120g00004 Stsc-Chr61120 16125 18781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61120g00004 1 573 Carbohydrate Esterase AT4G02330 56.752 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61120g00004 K01051 - gmx:100813051 781.556