Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61120g00003 ATGTCTAAGCTTCTCAATCTCATCATTCTCTTTCTTTTACCTTTGTTCTTATTAGCTTCCATAGCTTCTTCAGACACACCTCCTTCAACTCCAATTTCCCCTGAAAATCTTTGCAAATCCACACCCGACCCAAAATATTGCAAATCCGTTCTTCCACCGACGAAAAACGCCAATGTCTATGACTATGGCCGGTTTTCGGTTAAAAGCTCAATTTCACAAGCCACAAAGTTCTTGGCTCTTGTTAACAAGTACCTTCAACGGAGCAAAACGCTCTCTGTCCCCGCGATCCGAGCACTTCAAGATTGCAAGACGCTCGGGGAACTGAACCTCGATTTCTTGACTAGCTCGTTTCAAACGGTGAACAAGACAGCGAGGCTCTTGGCGACTTACCAGGCTGATGATATCCAGAACCTTCTTAGTGCCATTCTTACCAACCAACAAACATGCTCGGATGGACTTCAAGAAGCTTCTTCAGCTTGGAGTGTCAAGAATGGACTCAGTGTTCCACTTTCTAATGACACTAAGCTCTACAGTGTTTCTCTTGCTCTCTTCACTAAAGGGTGGGTTCCAAAGACAAAGAACAAAGTTGGAAAATCCTCGGTTCAAGTGACTAGGAAGCAACTTGGATTCAAAAATGGCCGCATGCCTCCTATGACAATGTCAAGCCAAACCCGAGCAATCTACGAGTCGGTGAGCCGCCGCAACCTTCTAGAACCGACAGTGGATGCGCAGGTGAAGGTGAATGGCATTGTAACCGTTAGCCAAGACGGCACAGGAAACTTCACCACCATCAGTGATGCCCTAGCGGCCGCACCCAACAAGTCCTCGTCCACGGATGGGTATTTCTTGATCTACGTTACCGCGGGAATTTACGACGAAATTGTGTCCATTGATAAAAGGAAGACTTATTTGATGATGATTGGAGATGGAATCAACAAAACAATCATCACAGGAAATCGAAGTGTCGTTGATGGCTGGACCACCTTTAATTCCGCCACTTTTGCCGTGGTAGGCCAAGGATTTGTGGGAGTGAACTTCACCGTTAGGAACACCGCCGGCGCCGTGAAACACCAAGCAGTGGCAGTCCGAAATGGTGCCGATCTATCCACATTCTATAGTTGCAGTTTCGAGGGATATCAAGACACGCTCTATGCACATTCTCTAAGACAATTCTATAGAGAATGTGACATATACGGTACTGTTGACTTTATATTTGGTAACGCTGCATCCGTATTTCAAAATTGCAACATATACCCTAGACTCCCAATGAGTGGACAATTCAATGCGATTACTGCTCAAGGCCGAACCGATCCGAACCAAAACACCGGAATCTCAATCCATAATTGCACAATCAAGCCGAGCGATGACCTAGCCGCGAACATGGGCGCGGCCGCGACCTACCTCGGTAGGCCGTGGAAGGAATACTCTAGGACAATTTACATGCAAACCTTCATGGATAGTGTGGTTGATCCTAAAGGGTGGCAACAATGGAATGGTGATTTTGCATTGAGCACATTGTATTATGCTGAGTATGATAACAATGGACCTGGTTCTAACACTTCCAACAGAATCACTTGGGCTGGTTACCATGTGATTAATGCTACGGATGCATCAAATTTCACTGTCTCTAATTTCTTGCTTGGAGATGATTGGTTGCCCAACACAGGTGTCACATACACTAGTAGCTTGATATAG 1695 0.4572 MSKLLNLIILFLLPLFLLASIASSDTPPSTPISPENLCKSTPDPKYCKSVLPPTKNANVYDYGRFSVKSSISQATKFLALVNKYLQRSKTLSVPAIRALQDCKTLGELNLDFLTSSFQTVNKTARLLATYQADDIQNLLSAILTNQQTCSDGLQEASSAWSVKNGLSVPLSNDTKLYSVSLALFTKGWVPKTKNKVGKSSVQVTRKQLGFKNGRMPPMTMSSQTRAIYESVSRRNLLEPTVDAQVKVNGIVTVSQDGTGNFTTISDALAAAPNKSSSTDGYFLIYVTAGIYDEIVSIDKRKTYLMMIGDGINKTIITGNRSVVDGWTTFNSATFAVVGQGFVGVNFTVRNTAGAVKHQAVAVRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAASVFQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGISIHNCTIKPSDDLAANMGAAATYLGRPWKEYSRTIYMQTFMDSVVDPKGWQQWNGDFALSTLYYAEYDNNGPGSNTSNRITWAGYHVINATDASNFTVSNFLLGDDWLPNTGVTYTSSLI 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61120g00003 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 186 IPR035513 -
Stsc61120g00003 564 SMART PMEI_2 29 183 IPR006501 GO:0004857
Stsc61120g00003 564 FunFam Pectinesterase 35 186 - -
Stsc61120g00003 564 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Stsc61120g00003 564 Pfam Pectinesterase 251 549 IPR000070 GO:0030599|GO:0042545
Stsc61120g00003 564 CDD PMEI-like_3 37 188 - -
Stsc61120g00003 564 PANTHER PECTINESTERASE 17 553 - -
Stsc61120g00003 564 Pfam Plant invertase/pectin methylesterase inhibitor 35 183 IPR006501 GO:0004857
Stsc61120g00003 564 FunFam Pectinesterase 244 563 - -
Stsc61120g00003 564 SUPERFAMILY Pectin lyase-like 248 560 IPR011050 -
Stsc61120g00003 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 186 IPR035513 -
Stsc61120g00003 564 NCBIfam pectinesterase inhibitor domain 5 185 IPR006501 GO:0004857
Stsc61120g00003 564 Gene3D - 249 564 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61120g00003 Stsc-Chr61120 6497 9171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61120g00003 10 564 Carbohydrate Esterase AT4G02330 61.754 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61120g00003 K01051 - gmx:100800971 878.241