Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61114g00002 ATGGATCCCAATCATCAAACCATTAACACCCTCATTTCTAACCTCTCCTCCGACTCCCACACCACTCGCCTCGCCGCCCTCCACCATCTCCGCATTCTCTCCAACCAAGACCCCGCCGCCCGTCCCCTCATCTCCACTGCCGGCGCAATCCCCCACCTCCTCCACGCCCTCTTCTCCTCCTCCCACCCCATCCAGGACAACGCCGCCGCCACCCTCCTCAACCTCTCAATCTCCGACCGCCGCCAACTTCTCTCCACTCCCCATCTTCTCGACGCCATCGCTCACCTCCTCTCCCGCCACGCCACCACTTCCTGCCCAACCGCCGTCCAGTCCGCAGCTGCCACACTCCACTGCCTCCTCTCCTTCCTCCCCGAATTCCGCCCCACCGTAGGCGCCAGCCGCGACATCCTCCGCTCTCTCCTTGGCATAATCGAATCTCCCGATTCCCCAAGGAGATCCTTGAAGGACGCCCTCAAGGCATCCTTTGGAATAGCGCTGCATCCGCCGAACCGGGCCATAATGGTCCAGCTCGGCGCGGTGTCAGCGCTATTCCATCTGGTAACAAAAGAAAGAAAGAAAAAGATCGGAATAACGGAAGATGCGACTGCCGTAATAGCGCAAATTGCGGGGTGCGAGGAGAGCGTGGAAGCTTTCCGTGAATCTTCGGGGATTCCAATATTGTCGAGTTTGTTAGAGTGTGACGTAAGCAGCTTGAGGACGAAGGAGAATGCAGTTTCGGGTTTGTTGAATTTGGTGAGGTGTAGTGGTAATAATAACGAAACGGTTATGGAGGTTAGAGAGAGAGCCGTTGCCGTTGAGACCTTAGATGGGATCATCTACGTGCAGGACCACGGTAGCGCCAAAGGGAAGAGCAAAGCTGTGGCTTTATTGAAGATTGTTTTTGACGGTGGTGGAAGCAGTAACAACAATTGTAGTGATTTGTATCCCATTGATCCCGATTTGTAG 966 0.5538 MDPNHQTINTLISNLSSDSHTTRLAALHHLRILSNQDPAARPLISTAGAIPHLLHALFSSSHPIQDNAAATLLNLSISDRRQLLSTPHLLDAIAHLLSRHATTSCPTAVQSAAATLHCLLSFLPEFRPTVGASRDILRSLLGIIESPDSPRRSLKDALKASFGIALHPPNRAIMVQLGAVSALFHLVTKERKKKIGITEDATAVIAQIAGCEESVEAFRESSGIPILSSLLECDVSSLRTKENAVSGLLNLVRCSGNNNETVMEVRERAVAVETLDGIIYVQDHGSAKGKSKAVALLKIVFDGGGSSNNNCSDLYPIDPDL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61114g00002 321 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 48 76 IPR000225 GO:0005515
Stsc61114g00002 321 SMART arm_5 37 77 IPR000225 GO:0005515
Stsc61114g00002 321 SMART arm_5 167 210 IPR000225 GO:0005515
Stsc61114g00002 321 SMART arm_5 211 253 IPR000225 GO:0005515
Stsc61114g00002 321 Pfam Armadillo/beta-catenin-like repeat 40 76 IPR000225 GO:0005515
Stsc61114g00002 321 SUPERFAMILY ARM repeat 5 262 IPR016024 -
Stsc61114g00002 321 PANTHER U BOX DOMAIN-CONTAINING 7 298 - -
Stsc61114g00002 321 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 223 IPR000225 GO:0005515
Stsc61114g00002 321 Gene3D - 2 299 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61114g00002 Stsc-Chr61114 16472 17437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61114g00002 8 297 U-box Gene Family AT2G23140 32.082 3.85e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61114g00002 - - gmx:100803111 355.14