Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61113g00001 ATGAGTTCCTTCTACTTGTTCCTTCTGCTTCCAACTTTCTTCTTCCTCCCCATTAACTGCTTTAACATCATCCAAGCTGCTACCCACCAAAATCCTACAGCTTATTATAACTGCACAATCAACACCACTTTTGCATCCAATAGCACATACCGTTCCAACACCATAACACTCCTAAATTGGCTCTCCTCCAATGCTACTACACATCCCAGAACATACAATACCACAGTAGCTGGCAAAAGCACTGCAGACACAGTTTATGGCATCTACTTTTGTATACGAGACGTCACACCAGGAATGTGCCAAGACTGTGTAGTAGAAGCTTCCAAACTCATATCATCTCTTTGTACCACAGCATTAGAAGCTATAATCTGGTACCGTGTATGCTTTATGCGTTACTCTAATCGTCATTTCTTCTCTAATGTGGAGGAAACTCCAAGTGTCACCTTTGTGAGCGATGTGACCTATGTGGGTCAAGTTGGGCTCTACAACACTATCCTCTGGAATATGCTGAATGATATGAGAACTATAGCTGCAGGTGATTCAAATAAAATGTCTGCATTGACACAGAAGATCACAGATGACCAAAACCTCTATGGTTCCGCTTGGTGTCTCCCATATCTTTCCACTGAGAATTGTAGCTGGTGTCTCAGTGATGCCATTGCATATATTCCATCAGGTTGCTGCAAGGGAAGATCTGGAGCAACTGTATTGTATCCTAGCTGTGGTATTAGATACGAATTATATCCATTCCTTAAGGAGCATATAATAGTTCCTCTGGCGCCGCCTCCACCACCACATACAGATTCTCATCCTTTGGCTCCACCAGGTAAACGAAAACAGAGGTACTTACAATTAACTAAAGTAGCTGTTCCAATTGCCATTGTCGTTACACTTGTGCTTTTAACTTTGGGTGGCTGCTGCTTTCTCCAAAGGAAAGGAAGAAAGAATCAAGATGATATTCTCAAAGAAAACTTTGGGAATGATATTAGCACTTTGGAGTCCTTGAGATTTGAATTAGGCCTGATTGAAGCTGCAACAAATAGATTTGCGACAGATAACAGGGTAGGCAAAGGCGGATTTGGAGAAGTCTATAAGGGTACTCTTTCAAATGGACAAGAAATTGCTGTGAAGAGGCTTACTAGAAGCTCTGGTGGACAAGGTGCCATAGAGTTTAAAAACGAGGTTCTTGTTATAGCCAAGCTTCAACACAGAAATCTAGTGAGGTTACTGGGATTTTGTTTGGAAGGTGAAGAAAAGATACTCATCTATGAGTATGTTCCAAACAAAAGTCTTGACTACTTTCTATGCGATAGTAATATGAATCCAAAAATATCTGATTTTGGTATGGCTAGAATTGTTGCTGTGGATCAAAATGAAGAAAGCACGCATAGAATAGTAGAATATGCAATGTTTGGACAATTCTCTGTAAAATCAGATGTGTTTAGTTTCGGAGTCATGGTTCTAGAGATTATTAACGGGAAGCGAAAAGGCAACTACTCTTCTGAATCAGAGTGCATTGATGACATCCGGAGACATGCTTGGGAAAAATGGACAGAGAAAACGCCACTGGAACTACTGGATCCTAACATGGAAGGCCCTTATTCGAGGGAAGAAGTCATCAAATGCATCCACATTGGTTTGTTATGTGTTCAAGAAGAACCAAATGACAGACCTACGATGGCAACAATTGTTTTCTACCTAAATAGCCCTTCACTCAACTTGCCATTCCCTCGTGAACCAGCATATTATTTCAAGCACAATAGAACAGTGGACGACATGACAACCAGCAAGGAGTTGGTTAATGACAGTGATTCCATTAATGGAATCACCATAAGTAAATTTTTTCCTCGTTGA 1854 0.4078 MSSFYLFLLLPTFFFLPINCFNIIQAATHQNPTAYYNCTINTTFASNSTYRSNTITLLNWLSSNATTHPRTYNTTVAGKSTADTVYGIYFCIRDVTPGMCQDCVVEASKLISSLCTTALEAIIWYRVCFMRYSNRHFFSNVEETPSVTFVSDVTYVGQVGLYNTILWNMLNDMRTIAAGDSNKMSALTQKITDDQNLYGSAWCLPYLSTENCSWCLSDAIAYIPSGCCKGRSGATVLYPSCGIRYELYPFLKEHIIVPLAPPPPPHTDSHPLAPPGKRKQRYLQLTKVAVPIAIVVTLVLLTLGGCCFLQRKGRKNQDDILKENFGNDISTLESLRFELGLIEAATNRFATDNRVGKGGFGEVYKGTLSNGQEIAVKRLTRSSGGQGAIEFKNEVLVIAKLQHRNLVRLLGFCLEGEEKILIYEYVPNKSLDYFLCDSNMNPKISDFGMARIVAVDQNEESTHRIVEYAMFGQFSVKSDVFSFGVMVLEIINGKRKGNYSSESECIDDIRRHAWEKWTEKTPLELLDPNMEGPYSREEVIKCIHIGLLCVQEEPNDRPTMATIVFYLNSPSLNLPFPREPAYYFKHNRTVDDMTTSKELVNDSDSINGITISKFFPR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61113g00001 617 ProSiteProfiles Protein kinase domain profile. 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61113g00001 617 Pfam Salt stress response/antifungal 38 134 IPR002902 -
Stsc61113g00001 617 Pfam Salt stress response/antifungal 161 248 IPR002902 -
Stsc61113g00001 617 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 310 425 - -
Stsc61113g00001 617 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 437 - -
Stsc61113g00001 617 Gene3D - 31 137 IPR038408 -
Stsc61113g00001 617 Gene3D - 148 250 IPR038408 -
Stsc61113g00001 617 Pfam Protein tyrosine and serine/threonine kinase 352 438 IPR001245 GO:0004672|GO:0006468
Stsc61113g00001 617 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Stsc61113g00001 617 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Stsc61113g00001 617 Gene3D Transferase(Phosphotransferase) domain 1 430 573 - -
Stsc61113g00001 617 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Stsc61113g00001 617 SUPERFAMILY Protein kinase-like (PK-like) 335 595 IPR011009 -
Stsc61113g00001 617 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61113g00001 Stsc-Chr61113 3673 6739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61113g00001 21 617 Receptor kinase-like Gene Family AT4G05200 37.988 6.81e-143 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc61113g00001 PK_Tyr_Ser-Thr 2.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61113g00001 - - adu:107467162 1008.05