Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61111g00002 ATGAATCTTGTGCCGAAGTGGGAAGGCATACATTTCAGTAAGGGAGCTCAAGAAAGAAGGTACCGTCCGACATTTTCGAGAAATAGAAATCCTGAAGAAGAAAAAACTTACAGAGACAGAACATTGAATGCCACTGCCTACAAGGAGTTGATAAATTCCTACTTAAAGAATATTAACACAAATTCAACGAAAGAAGAAATGCCTATTAGTGACCAGTGGAAGCAATTCCAGGACTCACGCAGTGTCGGGAAATCGAGGGAATTACTAATATCCCATACAGAGTATGAGGAAGAAACCTCCGAGTTGGATACTTTGTGGAGAGAAATGGAAGTGTCTCTGGCATCAACTTACATTGAAGATGCAGAGGATGAGAATGCAGCCGATCTTTTCGACACTCTGGAGAAACCAAAGGAAGCTTGTCATCATTACTTTAGATTGGATGATGAAATTGGAATTTGCTGCTTGAAATGTGGCTTTGTAGAGATGGACATTAAAGCTATGACACCAGCCTTTTCATGGCAGATTCAACATTCAATTTGGCACCAAGAAGAGAAGCAGGGCGGCGGCGGAGAAGATGCTGAATTGAAGGCTGCTGAATTTGAAGATTTCAATCTTGTCTCAAATGTTGAGGATGAAGATGAACCTTTATTGATGGAAGATGATAATGTGTGGGCATTAATTCCGGAACTTCGAAACAAGTTGCACCTCCACCAAAAGAAAGCGTTTGAGTTTCTTTGGAAAAACATTGCCGGCTCTACAGAACCAGCAAAGATGGACAGGCGATACAGAAAAAGAGGTGGCTGTGTGATATCTCATACTCCGGGAGCCGGAAAAACTTTCCTGATCATTGCATTTCTCGTTAGCTACTTAAAGTTATTCCCAGGAAAGAAACCTCTAGTCCTTGCACCAAAAACAACACTTTATACCTGGTATAAAGAATTTATCAAGTGGGAGATTCCAATACCGGTGTATCTAATTCATGGCCGAAGAACCTACAGAGTATTCAACCAGAAACAATCGATGGTTTTTCCCGGGATGCCGAAGCCCACGGAGGATGTCAAGCATGTTTTAGATTGCTTGGAAAAGATACAAAAGTGGCATTCACACCCAAGTGTTCTAATCATGGGCTATACTTCATTTCTGACATTGATGCGAGAGGATTCAAAGTATGCACACAGAAAGTATATGGCTAAAGTGCTGAGGGAAAGTCCCGGGCTCCTAGTATTGGATGAAGGGCACAATCCAAGAAGCACCAAGTCCAGGTTGAGGAAAGTTTTGATGAAGGTGCAAACAGACTTGAGAATATTGCTGTCAGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTCTTGTTGGCAAGACCAAAGTTTGCACATGAGGTGCTGAAAGTACTAGACCCGAAATACAAGAAGAAGAAAGGAAAACNNNNNNNNNNTGGAGTACCGAGCAAGGAAATTCTTCATAGAAGTGATCTCTAG 1488 0.4133 MNLVPKWEGIHFSKGAQERRYRPTFSRNRNPEEEKTYRDRTLNATAYKELINSYLKNINTNSTKEEMPISDQWKQFQDSRSVGKSRELLISHTEYEEETSELDTLWREMEVSLASTYIEDAEDENAADLFDTLEKPKEACHHYFRLDDEIGICCLKCGFVEMDIKAMTPAFSWQIQHSIWHQEEKQGGGGEDAELKAAEFEDFNLVSNVEDEDEPLLMEDDNVWALIPELRNKLHLHQKKAFEFLWKNIAGSTEPAKMDRRYRKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKKPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFNQKQSMVFPGMPKPTEDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKYAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTDLRILLSGTLFQNNFCEYFNTLLLARPKFAHEVLKVLDPKYKKKKGKXXXXGVPSKEILHRSDL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61111g00002 495 Pfam SNF2-related domain 232 461 IPR000330 GO:0005524|GO:0140658
Stsc61111g00002 495 CDD DEXHc_ATRX-like 234 460 - -
Stsc61111g00002 495 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 23 474 IPR044567 GO:0080188
Stsc61111g00002 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 460 IPR027417 -
Stsc61111g00002 495 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 259 459 IPR014001 -
Stsc61111g00002 495 SMART ultradead3 230 468 IPR014001 -
Stsc61111g00002 495 Gene3D - 207 482 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61111g00002 Stsc-Chr61111 9328 12960 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc61111g00002 SNF2_N 2.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61111g00002 K10875 - gmx:100811703 671.389