Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61108g00001 ATGTTCTATGCTTTCTATGAAGCTCAGAGCTCTACCTTACCTCTCTCCAAAACCCCACTTCTCATTTGGCTCAGTGGTGGCCCTGGCAGTTCCTCCATGCTTAGCAACCTCAATGCGGTTGGTCCATGGCTTCTCACAGAAACCTTCACTCTTGAACCCAACCCTGGTGCTTGGAACAAGTTATTTGGCCTTCTCTTTCTAGATAACCCCATTGGTACTGGATTCAGTATAGCCTCATCGCTGCAAGAAATCCCAACGGATCTAGAAGGTGTTGCCGAACACCTTTATGTTGCAATTACAGGGTTTCTTCGACGTAATCCTGTTTACAAACACCGCCCTATTTATATCGTTGGGCAAAGCTATGGCGGAAAGTATCCCACTACAACTGCAAATTTTATATTGAAAAAAAATGCAGAGTTGCATCCTTCTCAAAGAGTGAATTTAGTTGGTGTGGCTATTGGGGATGGGTTAATTGAGCTTCTGACCCAAATTGCCACCGTACCTGCTAATGCTTATTACGTGGGTTTGATCAATGAGAAGCAAAAGAGTGAGTTGGAGAAAGATCAATTGCAGGTAGTTAGGTTGACGCAGATTCAGAATTGGAGTGAAGCAGATAATGAATGGACTAGAGTCCAGGAGAAGATTACAAACATAGCGGGGTGGAAATGTTTGTCTGACTACACACTGAAAGGTAATACTGTTGACTATCTAGCTAGGGATAGTGAATTCTTGAACATGGCTGAGGTGAAGAAGGCACTGGGAGTGAACGAATCTTTTGTGTTTGAACCTAAGAGCAGTGAGGTAAGGACAGCGTTGCAGGCTGATATCATGAAGAGTGTCAAGTTTAGGGTAGAGGAGTTGTTGAGGAATAACACTACTAGGGTGTTGTTATACCAAGGTCAATATGATTTGATTGGTGGTGCAGTGCAAACTGAGGCCTGGGTGAAGACTATGAAATGGGAAGGGCTTGAGGATTTTCTGAATGCAGAGAGGAACATATGGAAGGTGAATGGAGAGCTTGCTGGCTATGTCCAACAATGGAAGTCACTCACCAATGTTGTGGTGTTAGGAGGTGGTCATGTTGTGCCTCTTGACCAGCCTGTTAATGCTCAGGCAATGATACAAGATTGGGTCTTGCAAAGGGGTACTTTTGGAAATTCCCCTTCTTTTAGTTCCATTTGA 1182 0.4399 MFYAFYEAQSSTLPLSKTPLLIWLSGGPGSSSMLSNLNAVGPWLLTETFTLEPNPGAWNKLFGLLFLDNPIGTGFSIASSLQEIPTDLEGVAEHLYVAITGFLRRNPVYKHRPIYIVGQSYGGKYPTTTANFILKKNAELHPSQRVNLVGVAIGDGLIELLTQIATVPANAYYVGLINEKQKSELEKDQLQVVRLTQIQNWSEADNEWTRVQEKITNIAGWKCLSDYTLKGNTVDYLARDSEFLNMAEVKKALGVNESFVFEPKSSEVRTALQADIMKSVKFRVEELLRNNTTRVLLYQGQYDLIGGAVQTEAWVKTMKWEGLEDFLNAERNIWKVNGELAGYVQQWKSLTNVVVLGGGHVVPLDQPVNAQAMIQDWVLQRGTFGNSPSFSSI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61108g00001 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 54 66 IPR001563 GO:0004185|GO:0006508
Stsc61108g00001 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 67 77 IPR001563 GO:0004185|GO:0006508
Stsc61108g00001 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 102 127 IPR001563 GO:0004185|GO:0006508
Stsc61108g00001 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 350 363 IPR001563 GO:0004185|GO:0006508
Stsc61108g00001 393 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 367 IPR001563 GO:0004185|GO:0006508
Stsc61108g00001 393 ProSitePatterns Serine carboxypeptidases, histidine active site. 350 367 IPR033124 GO:0004185
Stsc61108g00001 393 Gene3D alpha/beta hydrolase 1 385 IPR029058 -
Stsc61108g00001 393 SUPERFAMILY alpha/beta-Hydrolases 1 378 IPR029058 -
Stsc61108g00001 393 Pfam Serine carboxypeptidase 1 378 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61108g00001 Stsc-Chr61108 1 1301 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61108g00001 236 378 Calmodulin-binding Proteins AT2G22960 22.917 3.31e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61108g00001 K09645 - gmx:100780822 493.812