Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61102g00001 ATGTCCAATCCCAAAACACAGTCTCTGTCTCAGACGGATCCACAACTCCCTCTCCGTAACCTCGCACAGATCCAAACCGGACTCGATTCCCTCCATCGCTTTTTATCGGAATCCATCGCCTCCAACAACCCTCTCTCTGACCACCAATCCGCCGCCGTTTCCGATCAAATCGCCTCCGCCATCCACCAAACCATCGCCAACGCCTCCGCTCTCGTCTCCTACTCCAAACCCTTCCACCCGCCGGATTCCATTCCCGCCGCCGCACCGCTGTTACCTAGGGTTGACCTAACCGCCGGCATCGAGAAAATCAAACGCGCGTCGGATCTGAAAATCGAGCCGCCGGATGATGACACCGCAACCGATGGCGGAGACGACGAGATCGTGGAGCTCGACGCCGTGGAGATCCTCGCGGAGCACGTTCACTTCTGCGAGATCTGCGGGAAAGGGTTCCGGCGAGACGCGAATCTCCGTATGCACATGCGCGCTCACGGGAACCAGTTCAAGACACCGGAGGCGCTAGCGAAGCCGGAGAATTCGTCGCCCTCCGGCGGCGGCGCCGTGCAGCGGCGATACTCGTGCCCGTTCGAGGGATGCAACAGGAACAAGAACCACCGGCGGTTCAGGGCGCTGAAATCGATGGTGTGTGTTAAGAATCACTTCAAGAGAAGCCACTGTCCGAAGATGTACTCGTGCACGCGGTGCCATAAGAAGAGCTTTTCGGTGCTCTCTGATCTGAAGAGCCACATGAAGAACTGCGGTGAATCCAAGTGGAAGTGCTCTTGTGGAACCACTTTCTCAAGAAAGGATAAACTTTTTGGGCACATTGCTTTGTTTGAAGGGCATGTACCCTTGCTTGAAGAGGATACTAATAATGATAATAAGGGGAAGCAAGTGCAGGAAGATTTTGATGATAATGAGGATCAAGCTGACTTGAGTGCTTGCTTTTTGGATGAAAATGATAATGATGGTGATTTGCCTGATGGGTTTTTTGATGATTTGAGCCCTTTAGGGTTTCCCTTGATTTAA 1026 0.5331 MSNPKTQSLSQTDPQLPLRNLAQIQTGLDSLHRFLSESIASNNPLSDHQSAAVSDQIASAIHQTIANASALVSYSKPFHPPDSIPAAAPLLPRVDLTAGIEKIKRASDLKIEPPDDDTATDGGDDEIVELDAVEILAEHVHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPENSSPSGGGAVQRRYSCPFEGCNRNKNHRRFRALKSMVCVKNHFKRSHCPKMYSCTRCHKKSFSVLSDLKSHMKNCGESKWKCSCGTTFSRKDKLFGHIALFEGHVPLLEEDTNNDNKGKQVQEDFDDNEDQADLSACFLDENDNDGDLPDGFFDDLSPLGFPLI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61102g00001 341 SMART c2h2final6 141 163 IPR013087 -
Stsc61102g00001 341 SMART c2h2final6 191 224 IPR013087 -
Stsc61102g00001 341 SMART c2h2final6 229 250 IPR013087 -
Stsc61102g00001 341 SUPERFAMILY beta-beta-alpha zinc fingers 138 164 IPR036236 -
Stsc61102g00001 341 Gene3D Classic Zinc Finger 185 279 - -
Stsc61102g00001 341 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 115 303 IPR044300 GO:0010044|GO:0010447
Stsc61102g00001 341 Pfam Zinc finger, C2H2 type 142 163 IPR013087 -
Stsc61102g00001 341 FunFam Zinc finger 45-like 138 164 - -
Stsc61102g00001 341 Gene3D Classic Zinc Finger 140 163 - -
Stsc61102g00001 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Stsc61102g00001 341 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61102g00001 Stsc-Chr61102 1568 2593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61102g00001 115 338 C2H2 Transcription Factor Family AT1G34370 50.417 4.11e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc61102g00001 zf-C2H2 0.00023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61102g00001 - - gmx:100796506 370.163