Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61100g00001 ATGTCTCTGCGACCCAATTCCAACTCTCGCTCCGAGACAAGGAAGAAGTCCTACAAGATCGGGGTCGACGCCGATGAGGCTCGCCGCCGGAGGGAGGATAACCTCGTCGAGATCAGGAAGAACAAGCGCGAGGACAGTCTCCTCAAGAAACGAAGGGAGGGGCTTCTCCTTCAACCTCAATTGCCCAACAACAATAACAATAACAATGCCCCTACCCCTTCCTTCCCCGCCAACAGGTTAGAAGGCATTCCTGTGATGGTACAACGAGTATGGTCCGATGACCCAGCTGCACAATTAGAAGCAACTACTCAGTTTAGAAAGCTATTATCAATTGAACGCAGCCCTCCAATTGATGAGGTCATTAAGGCAGGTGTTGTCCCTAGGTTTGTGGAGTTTTTGGGAAGGCATGATCTACCACAATTGCAATTTGAGGCTGCATGGGCTCTAACAAATGTTGCATCTGGAACATCTGAGCACACAGGAGTTGTCATTGAACATGGTGCTGTTCCATTGTTTGTGCAGCTTCTCAGCTCTGGGAGTGATGACGTTAGAGAACAGGCAGTATGGGCCTTAGGTAATGTTGCTGGTGACTCCCCAAACTGTAGGGATCTTGTTCTAAGTCATGGTGCACTCATGCCATTACTGTCTCAATTGAATCAACATTCAAAACTATCTATGTTGAGGAATGCTACATGGACTTTGTCTAATTTCTGCCGTGGAAAGCCTCCAACACCATTTGAACAGGTAAAGCCTGCTTTGCCTGTTCTTCGGGAGCTCATTTACTTGAATGATGAAGAAGTTCTAACAGATGCGTGCTGGGCTCTCTCTTACCTTTCAGATGGCCCAAATGAAAAAATTCAAGCTGTAATTGAAATAGGAGTCTGCCCAAGACTTGTGGAGCTCTTACTACATCCATCACCTACAGTTCTTATACCTGCTCTTCGAACTGTAGGAAATATTGTTACCGGTGACGATGCTCAGACTCAGTTTGTAATTGATAATGGAGTTCTCCCCTGTCTTCATCAACTTCTTTCACAAAATAACAAGAAAAACATCAGGAAAGAAGCTTGTTGGACGATATCAAATATCACAGCTGGGAATAGAATTCAAATACAGGCTGTCATTGAGGCCAGCGTTATTCCTCCTCTTGTCAATCTTCTTCAGCATGCAGAATTTGAAATCAAGAAGGAAGCTGCATGGGCCATCTCCAATGCAACTTCTGGAGGATCTCATGAGCAGATTCAGTTCCTGGCAAGTCAAGGTTGCATCAAGCCATTGTGTGATCTCTTGACATGTCCTGACCCAAGGATTGTGACGGTTTGTCTTGAGGGACTGGATAACATTTTGAAGGTTGGAGAAGCTGACAAGGAAATGGGACTCAACGGTGGGATCAATGTTTATGCACAAATGGTTGACGAATGTGAAGGATTGGATAACATTGAAAATCTGCAGACCCATGACAACAATGAGATTTATGAGAGGGCTGTGAAGATTTTGGAGAGATATTGGGCTGAGGATGAATTGGAAGTAGAGCAGAATCAGAATGGTGGGGATGNNNNNNNNNNCTCTTTCGGAACTAACCAGCCGAACCTCCCGCCAGGTGGTTTTAATTTCGGTTGA 1620 0.4506 MSLRPNSNSRSETRKKSYKIGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLLLQPQLPNNNNNNNAPTPSFPANRLEGIPVMVQRVWSDDPAAQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTGVVIEHGAVPLFVQLLSSGSDDVREQAVWALGNVAGDSPNCRDLVLSHGALMPLLSQLNQHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPVLRELIYLNDEEVLTDACWALSYLSDGPNEKIQAVIEIGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLHQLLSQNNKKNIRKEACWTISNITAGNRIQIQAVIEASVIPPLVNLLQHAEFEIKKEAAWAISNATSGGSHEQIQFLASQGCIKPLCDLLTCPDPRIVTVCLEGLDNILKVGEADKEMGLNGGINVYAQMVDECEGLDNIENLQTHDNNEIYERAVKILERYWAEDELEVEQNQNGGDXXXXSFGTNQPNLPPGGFNFG 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61100g00001 539 Gene3D - 82 504 IPR011989 -
Stsc61100g00001 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 378 406 IPR000225 GO:0005515
Stsc61100g00001 539 Gene3D - 13 52 IPR036975 GO:0006606
Stsc61100g00001 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 367 IPR000225 GO:0005515
Stsc61100g00001 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 124 167 IPR000225 GO:0005515
Stsc61100g00001 539 MobiDBLite consensus disorder prediction 1 32 - -
Stsc61100g00001 539 MobiDBLite consensus disorder prediction 58 75 - -
Stsc61100g00001 539 FunFam Importin subunit alpha 13 52 - -
Stsc61100g00001 539 MobiDBLite consensus disorder prediction 512 539 - -
Stsc61100g00001 539 PIRSF Importin_alpha 5 538 IPR024931 GO:0005737|GO:0006606|GO:0061608
Stsc61100g00001 539 SMART arm_5 156 196 IPR000225 GO:0005515
Stsc61100g00001 539 SMART arm_5 113 154 IPR000225 GO:0005515
Stsc61100g00001 539 SMART arm_5 367 407 IPR000225 GO:0005515
Stsc61100g00001 539 SMART arm_5 410 450 IPR000225 GO:0005515
Stsc61100g00001 539 SMART arm_5 282 322 IPR000225 GO:0005515
Stsc61100g00001 539 SMART arm_5 241 280 IPR000225 GO:0005515
Stsc61100g00001 539 SMART arm_5 324 365 IPR000225 GO:0005515
Stsc61100g00001 539 SMART arm_5 197 239 IPR000225 GO:0005515
Stsc61100g00001 539 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Stsc61100g00001 539 PANTHER IMPORTIN ALPHA 14 507 - -
Stsc61100g00001 539 MobiDBLite consensus disorder prediction 49 77 - -
Stsc61100g00001 539 MobiDBLite consensus disorder prediction 9 32 - -
Stsc61100g00001 539 SUPERFAMILY ARM repeat 14 505 IPR016024 -
Stsc61100g00001 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 167 209 IPR000225 GO:0005515
Stsc61100g00001 539 Pfam Importin beta binding domain 14 103 IPR002652 GO:0006606|GO:0061608
Stsc61100g00001 539 FunFam Importin subunit alpha 81 504 - -
Stsc61100g00001 539 Pfam Armadillo/beta-catenin-like repeat 411 448 IPR000225 GO:0005515
Stsc61100g00001 539 Pfam Armadillo/beta-catenin-like repeat 198 239 IPR000225 GO:0005515
Stsc61100g00001 539 Pfam Armadillo/beta-catenin-like repeat 283 321 IPR000225 GO:0005515
Stsc61100g00001 539 Pfam Armadillo/beta-catenin-like repeat 370 406 IPR000225 GO:0005515
Stsc61100g00001 539 Pfam Armadillo/beta-catenin-like repeat 157 195 IPR000225 GO:0005515
Stsc61100g00001 539 Pfam Armadillo/beta-catenin-like repeat 324 365 IPR000225 GO:0005515
Stsc61100g00001 539 Pfam Armadillo/beta-catenin-like repeat 252 279 IPR000225 GO:0005515
Stsc61100g00001 539 Pfam Armadillo/beta-catenin-like repeat 114 154 IPR000225 GO:0005515
Stsc61100g00001 539 MobiDBLite consensus disorder prediction 516 539 - -
Stsc61100g00001 539 Pfam Atypical Arm repeat 465 512 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61100g00001 Stsc-Chr61100 675 5425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61100g00001 155 429 U-box Gene Family AT1G23030 24.188 1.54e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61100g00001 K15042 - cave:132170355 889.797