Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61098g00003 ATGAACTTCGAAACGCAACCTGGAACGGCGTCGTTTTGGTGTTACAGCTGCACAAGCTTCGTTCATATCATGAACGAAACCGACAACGTCCTCTGCCCTAACTGCGAAAGCGGTTTCGTTGAACAGATCCGACCCGAACCATCTCCAGACCACTTTTTCAGCCCCTTATCCGACGTCTCCGATTCCAGGCGCCAAGGCTTCCGCCGTCGCCGCCGCAGTGCTGCCGGAAGTCGCTCCCCTTTCAATCCTGTGATTGTTCTCCGTGGCCCCACCGATGACGCCGATCGTGAAGGTGGTGCTGCCTTCGAGCTATACTACGACGACGGCGACGGAAGCGGTTTACGGCCTCTTCCGCCGGCTATTGCGGAGTTTCTGTTAGGTTCCGGATTTGACAGGCTTTTGGAGCAGTTTTCGCAGATCGAGACGAACGCGTTTGGGCGCCCGGAGAATCCGCCGGCTTCTAAGGCGGCGATAGAGTCGATGCCTTCGTTGGAGATCGCGGAGGCGCACGTGCGTGCGGAAGCGCACTGCGCCGTGTGTAAGGAAGCATTTGAGCTACAGGCGGAGGCGCGTGAGCTTCCATGTAAGCATATATACCACACCGATTGCATCGTTCCGTGGCTTTCGATTCGGAATTCTTGCCCTGTGTGTCGACACGAGCTTCCTTCAGATCACAATTCGTTGATGTCTGGTTCAATCGACGAGGAATCGATTGGATTAACGATATGGAGGCTGCCGGGAGGGGGATTCGCCGTCGGTAGGTTTTCTGGTGGCCGCAGAGCCGGCGAGAACCACCTTCCCGTGGTGTACACGGAGATGGACGGAGCACTGAACCCTAACGGAGCTCCGAGGAGGATTTCTCGTTCTGTGAGGAGCAATAGGGTTAGGGAGAGTCGTGGAGTTGGTAGGGTTTTTCGAAATTTCATGTCAATTTTTGGAAGATTGGGATCTAGCAGGTCTAGAATTTTTGGTACCGAACGTGTTTCGCTGAGATCGGTGTTCAATAGGAACTCACGGAGGCGAACATGGAGAGTTGAAGATTGA 1044 0.546 MNFETQPGTASFWCYSCTSFVHIMNETDNVLCPNCESGFVEQIRPEPSPDHFFSPLSDVSDSRRQGFRRRRRSAAGSRSPFNPVIVLRGPTDDADREGGAAFELYYDDGDGSGLRPLPPAIAEFLLGSGFDRLLEQFSQIETNAFGRPENPPASKAAIESMPSLEIAEAHVRAEAHCAVCKEAFELQAEARELPCKHIYHTDCIVPWLSIRNSCPVCRHELPSDHNSLMSGSIDEESIGLTIWRLPGGGFAVGRFSGGRRAGENHLPVVYTEMDGALNPNGAPRRISRSVRSNRVRESRGVGRVFRNFMSIFGRLGSSRSRIFGTERVSLRSVFNRNSRRRTWRVED 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61098g00003 347 CDD RING-H2_RNF126-like 177 218 - -
Stsc61098g00003 347 MobiDBLite consensus disorder prediction 47 77 - -
Stsc61098g00003 347 FunFam E3 ubiquitin-protein ligase RING1-like 139 224 - -
Stsc61098g00003 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 224 IPR013083 -
Stsc61098g00003 347 Pfam Protein of unknown function (DUF1117) 238 324 IPR010543 -
Stsc61098g00003 347 SMART ring_2 177 217 IPR001841 -
Stsc61098g00003 347 Pfam Ring finger domain 176 218 IPR001841 -
Stsc61098g00003 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 56 222 - -
Stsc61098g00003 347 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Stsc61098g00003 347 SUPERFAMILY RING/U-box 157 224 - -
Stsc61098g00003 347 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61098g00003 Stsc-Chr61098 11105 13036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61098g00003 116 231 C3H Transcription Factor Family AT5G01980 45.690 4.17e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61098g00003 K11982 - gmx:100792874 457.218