Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61093g00001 CCATATCTACACGAGTCACGGCACCGTCATGCTTTGAATCGGGTGAGGGGTTCCGGGGGACGATTCCTCAGCACCAAACAGCATCAACAATCTAATGCCCATTTAGGCTCGAACACCAACAACGCATATGACAACAAAGATGCATCTGAAGTTGAAATTCATCTCTCGAGAACCGCCAGCAATGTGTCCTCAATCGCAACCTTCTCGGATCGAATGACCTTGTCAAGCGACAATGCTAGGGATGACAATGGGTATATGTGGGGGCAGCTAGAACCACAACTGTTTCTGGCAAGCCCTTCAAACATTGGTGGAACATATCATGCTTCAGTGGTCCGGTGA 339 0.4897 PYLHESRHRHALNRVRGSGGRFLSTKQHQQSNAHLGSNTNNAYDNKDASEVEIHLSRTASNVSSIATFSDRMTLSSDNARDDNGYMWGQLEPQLFLASPSNIGGTYHASVVR 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61093g00001 112 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 76 IPR001289 GO:0003700|GO:0006355
Stsc61093g00001 112 Gene3D - 1 27 - -
Stsc61093g00001 112 ProSiteProfiles NF-YA/HAP2 family profile. 1 25 IPR001289 GO:0003700|GO:0006355
Stsc61093g00001 112 MobiDBLite consensus disorder prediction 1 44 - -
Stsc61093g00001 112 MobiDBLite consensus disorder prediction 20 44 - -
Stsc61093g00001 112 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 1 22 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61093g00001 Stsc-Chr61093 442 780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61093g00001 1 35 CCAAT-HAP2 Transcription Factor Family AT3G14020 80.000 1.47e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc61093g00001 CBFB_NFYA 6.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61093g00001 K08064 - gmx:100793856 99.3673