Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61087g00006 ATGGCTGACACAGCTGCTGAAGTTCCAACAAGGAGGTCAAGGAGCAAAAGGGCTCTCAAGGACAAAAACTCGTTAGCAAATGATTCCGCAACCACCATCACCACCAAGCTCTCAGAATTCACACCTCCCATTTCTGAACAAGTCATGGTGAAGGAGAACCTCGACACCACCACCACCACCACCACCCTTTCTCAACCCAAGAAAGGAAGACCTGCTTCAAAGAAACAAAGCACCAAGCAGCAGCAATCTTCTTCTTCTTCTTTTGAGAAAGAGCTGCTTGAGATGCAGGAGAAGCTGCAGCGGCTGCACCTCGAGAAGGAGAAAACCGAGGAGCTCTTGAAGGCCAAGGATGAGGCCCTCAAGCTCAAGGATCAAGAGCTTGAAACCCGAGGCAAGGAACAGGAGAAGCTCCAGACCGAGCTCAAGAAGCTCCAGAAGTTGAAGGAGTTCAAACCCACCATGAATTTGCCATCTCTGCTGAAAGATAAGGAACAACAAGACAAGAAGGACAAGAAGAAAAGGCCCTCTGCTCCTTACATTCTCTGGTGCAAAGATCAATGGAATGAGATAAAGAAAACAAACCCAGAGGCAGAATTCAAGGAGATCTCAAACATGTTGGGGGCTAAATGGAAGACCGTTAGCGCCGAAGAGAAGAAGCCGTACGAAGACAAGTACAACGCTGAAAAAGAAGCATACATGGAGGTAATGGCGAAGGAAAAGCGCGAGGCTGAGGCATTGAAGCTCTTAGAAGATGATCAGAAGCAGAAGATGGCCATGGAGCTGCTCGAACAGTACATGCAGTTCAGACAAGAGACAGAGAAAGAGACAAAGAAGAAGAACAAGAACAAGAAAGAGAAGGATCCATTGAAGCCAAAGCACCCATTGTCAGCATATATCATTTTCACAAACGAAAGGCGTGCGGCTCTTGCTGCAGAGAACAAGAGCGTTGTGGAGGTTACGAAGATCACAGGGGAAGAGTGGAAGAACATGACGGAGGAGATGAAGAGGCCTTACGAGGAGATGGCGAAGAAGAAGAAGGAGCAGTATGTTAAAGAAATGGAGGCTTATAAGCAGAAGAGAGATGAGGAGGCTGCAAATCTGATGAAGGAAGAGGAGGAGCACATGAAGCTTCAGAAGCAGGAAGCATTGCAGATGCTCAAGAAGAAAGAGAAAACTGAAAACCTTATCAAGAAAACAAAAACAAAGCAGCAGAAGAAGAAGCTAGAGAGAAATTGTGATCCAAACAGGCCTAAAAGGCCTCCATCCTCATTCCTCTTGTTCAGCAAGGAAGCAAGGAAGCTTTTGCAGGAGGAACGTCCAGGAATCAACACTTCCACCCTTAATGCTCTTGTTTCATTGAAGTGGAAGGAACTGAGTGAGGAAGAGAGACAAATGTGGAATGGGAAAGCAAGTGAAGCAATGGAGGTGTATAAGAAGGAATTGGAGGAATACAACAGAACCATTGCTGCTGCAACTCAAGAATGA 1485 0.4633 MADTAAEVPTRRSRSKRALKDKNSLANDSATTITTKLSEFTPPISEQVMVKENLDTTTTTTTLSQPKKGRPASKKQSTKQQQSSSSSFEKELLEMQEKLQRLHLEKEKTEELLKAKDEALKLKDQELETRGKEQEKLQTELKKLQKLKEFKPTMNLPSLLKDKEQQDKKDKKKRPSAPYILWCKDQWNEIKKTNPEAEFKEISNMLGAKWKTVSAEEKKPYEDKYNAEKEAYMEVMAKEKREAEALKLLEDDQKQKMAMELLEQYMQFRQETEKETKKKNKNKKEKDPLKPKHPLSAYIIFTNERRAALAAENKSVVEVTKITGEEWKNMTEEMKRPYEEMAKKKKEQYVKEMEAYKQKRDEEAANLMKEEEEHMKLQKQEALQMLKKKEKTENLIKKTKTKQQKKKLERNCDPNRPKRPPSSFLLFSKEARKLLQEERPGINTSTLNALVSLKWKELSEEERQMWNGKASEAMEVYKKELEEYNRTIAAATQE 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61087g00006 494 SUPERFAMILY HMG-box 166 237 IPR036910 -
Stsc61087g00006 494 MobiDBLite consensus disorder prediction 9 23 - -
Stsc61087g00006 494 Coils Coil 85 125 - -
Stsc61087g00006 494 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 492 IPR044601 GO:0003677
Stsc61087g00006 494 MobiDBLite consensus disorder prediction 161 175 - -
Stsc61087g00006 494 Coils Coil 127 147 - -
Stsc61087g00006 494 MobiDBLite consensus disorder prediction 50 90 - -
Stsc61087g00006 494 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 172 240 IPR009071 -
Stsc61087g00006 494 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 291 357 IPR009071 -
Stsc61087g00006 494 MobiDBLite consensus disorder prediction 148 175 - -
Stsc61087g00006 494 MobiDBLite consensus disorder prediction 387 423 - -
Stsc61087g00006 494 Coils Coil 339 389 - -
Stsc61087g00006 494 Gene3D High mobility group box domain 275 369 IPR036910 -
Stsc61087g00006 494 Gene3D High mobility group box domain 160 250 IPR036910 -
Stsc61087g00006 494 MobiDBLite consensus disorder prediction 24 42 - -
Stsc61087g00006 494 MobiDBLite consensus disorder prediction 268 293 - -
Stsc61087g00006 494 SMART hmgende2 416 486 IPR009071 -
Stsc61087g00006 494 SMART hmgende2 171 241 IPR009071 -
Stsc61087g00006 494 SMART hmgende2 290 358 IPR009071 -
Stsc61087g00006 494 Pfam HMG (high mobility group) box 417 485 IPR009071 -
Stsc61087g00006 494 Pfam HMG (high mobility group) box 291 357 IPR009071 -
Stsc61087g00006 494 Pfam HMG (high mobility group) box 173 237 IPR009071 -
Stsc61087g00006 494 SUPERFAMILY HMG-box 278 363 IPR036910 -
Stsc61087g00006 494 Coils Coil 222 256 - -
Stsc61087g00006 494 Gene3D High mobility group box domain 395 489 IPR036910 -
Stsc61087g00006 494 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 417 485 IPR009071 -
Stsc61087g00006 494 MobiDBLite consensus disorder prediction 268 292 - -
Stsc61087g00006 494 SUPERFAMILY HMG-box 403 484 IPR036910 -
Stsc61087g00006 494 Coils Coil 467 494 - -
Stsc61087g00006 494 MobiDBLite consensus disorder prediction 1 94 - -
Stsc61087g00006 494 CDD HMG-box_AtHMGB6-like_rpt1 174 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61087g00006 Stsc-Chr61087 17219 19216 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc61087g00006 HMG_box 8.2e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61087g00006 K09273 - gmx:100783033 540.036