Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61085g00002 ATGGTAGACTTGAGAAGATCGGAATCAGTAAAGCCTAATAATAACGGTGCACCTACGACTGTAATCGCCGTGAACAGCAGCCGGAAAAGCCATTACGCCGTCCAATGGACCGTAGAACATATTCTCAGGAAGAATTCCTCTTGCATTCTCGTTCACGTTCAGACCAATCGTTTGTACCATCAGGATTCAGTTGCCCCAGGTGAAGGTCGTCCACCAACTGAAGAAGAATTGCAGCGGTTTTTCCTCCCTTTCAGAGGGTTTTGTGCTCGAAAAGGGATTGTAGCGAGAGAGTTGGTGTTACAAGGGGCTCATGTTACAACTGCACTTACTCAATATGTAAATGAAAACTATATTAGTAGCATCATTGTTGGTGCTTCCCAATGGAACTCTATCATGAGGAAACTTAAGAATACGGATGTGCCAAGTAGCTTAGCTAAGTCTTTGCCAGATTTTTGCACATTATATGTCATATCAAAAGGAAAAGTCCAAACTATCCATCCAGCAGGTCAAGGTCAAAATAGTAAATTCCGAAAAGCAGCTACAATTAAAGAGGCAATGCCAGATTATTCTTTAGATAATTCACCTGAAGATATAAACAGCTTGATTAAAGAGGGTACAATATTAATGACGCCACGTACTGTTTCACCAAGGGAACAAAGTCCAAGAATATCGGTGGGAGGCTCTTCATCACAAACCGACAGTGATACCGATGAATTCACCGATATGTCACAAATCACCAAAAAAAAAATGGAGGAATTAATGAGATTAAAACTTGAATTAAAGAAAACAACAGAGCAATATGGCTTGGTTTGTAAACAAGTCGACTCTGCGAATAAGGTAGTAGAGTATGAAAAGGTTAAGCTTGTGAGACAGAAAACAGTGAGTGCTACAGCATCAGCAGAAAAAACACAACGCATGGAAAAAGAGGCAGAGGCCCAAAAGAGAAATGAAGCCTTGCTAAGATCCAAGCAAGAAAAAGAAGAAGCTACTACCTCCTTTCACAAGAATATGGCTCCATACAGAAGATACCACATTAAAGAAATCGAAATTGCAACTAATTACTTTGATCTTGATCTCAAAATTGGGGAAGGTGGATATGGACCAGTTTTTAAAGGAGTAATTGACAACACTGATGTTGCCATCAAGGCTGTGAGGCCAGACATAAGCTATGGAGAAAGGCAATTTAACCAAGAGGTTCAAGTTTTGAGCACCATAAGACATCCACACATGGTACTCCTTGTAGGTGCATGCCCAGAGTTCGGATGTCTTGTATATGAATACATGGATTATGGAAGTTTGGAAGATCGTTTATTCAGAAAAGGAAACACTCCTCCAATCCCATGGAGAATTCGTTTCAGAATTGCATCAGAAATTGCCACTGCTCTTCTTTACCTTCACCAGCTAAAACCAGAGCCACTCGTTCACCGTGATCTCAAGCCAGCAAACATCTTATTGGACAGAAATTTCTTTAGCAAGATCGGCGATGTGGGCCTCGCCAGGCTCGTCCCGCCTTCTGTCGCTGACAAAACTACCCAGTATAGATTGACCAAAGCCGCCGGAACCTTCTGTTATATTGATCCGGAGTATCAACAGACAGGGTTATTGGGTGTGAAGTCAGATATATATTCATTTGGTGTGATGCTGCTGCAGATTCTTACTGCAAAGCCTCCAATGGGGTTGGCTCACTTAGTTGATAGTGCTATTGAAGGTGGAAACTTTGAAGAAGTTCTTGATCCTAGTTTGAATGATTGGCCAGTTGAAGATGCATTGTCTTGTGCTAAGTTGGCTTTGAAGTGTTGTGAGATGAGAAAGAGAGATAGACCAAATCTTGCTACTGTGATTTTACCAGAGTTGAATAGGCTCAGAGATTTGAGATAG 1878 0.4137 MVDLRRSESVKPNNNGAPTTVIAVNSSRKSHYAVQWTVEHILRKNSSCILVHVQTNRLYHQDSVAPGEGRPPTEEELQRFFLPFRGFCARKGIVARELVLQGAHVTTALTQYVNENYISSIIVGASQWNSIMRKLKNTDVPSSLAKSLPDFCTLYVISKGKVQTIHPAGQGQNSKFRKAATIKEAMPDYSLDNSPEDINSLIKEGTILMTPRTVSPREQSPRISVGGSSSQTDSDTDEFTDMSQITKKKMEELMRLKLELKKTTEQYGLVCKQVDSANKVVEYEKVKLVRQKTVSATASAEKTQRMEKEAEAQKRNEALLRSKQEKEEATTSFHKNMAPYRRYHIKEIEIATNYFDLDLKIGEGGYGPVFKGVIDNTDVAIKAVRPDISYGERQFNQEVQVLSTIRHPHMVLLVGACPEFGCLVYEYMDYGSLEDRLFRKGNTPPIPWRIRFRIASEIATALLYLHQLKPEPLVHRDLKPANILLDRNFFSKIGDVGLARLVPPSVADKTTQYRLTKAAGTFCYIDPEYQQTGLLGVKSDIYSFGVMLLQILTAKPPMGLAHLVDSAIEGGNFEEVLDPSLNDWPVEDALSCAKLALKCCEMRKRDRPNLATVILPELNRLRDLR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61085g00002 625 SUPERFAMILY Protein kinase-like (PK-like) 335 614 IPR011009 -
Stsc61085g00002 625 Pfam Universal stress protein family 21 134 IPR006016 -
Stsc61085g00002 625 Gene3D HUPs 19 146 IPR014729 -
Stsc61085g00002 625 ProSiteProfiles Protein kinase domain profile. 355 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61085g00002 625 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 327 427 - -
Stsc61085g00002 625 CDD STK_N 19 160 - -
Stsc61085g00002 625 PANTHER OS02G0152300 PROTEIN 21 624 - -
Stsc61085g00002 625 Coils Coil 246 266 - -
Stsc61085g00002 625 Pfam Protein kinase domain 359 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61085g00002 625 Coils Coil 621 625 - -
Stsc61085g00002 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Stsc61085g00002 625 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 135 - -
Stsc61085g00002 625 SMART serkin_6 355 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61085g00002 625 MobiDBLite consensus disorder prediction 212 238 - -
Stsc61085g00002 625 Gene3D Phosphorylase Kinase; domain 1 332 427 - -
Stsc61085g00002 625 Coils Coil 309 329 - -
Stsc61085g00002 625 Gene3D Transferase(Phosphotransferase) domain 1 428 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61085g00002 Stsc-Chr61085 16325 18919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61085g00002 97 624 Receptor kinase-like Gene Family AT5G12000 46.546 1.20e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc61085g00002 Pkinase 4.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61085g00002 - - lang:109347877 692.575