Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61082g00004 ATGAGTTGTACTGACACAACCCGGGTTTGCACTTCTTTCTTGGCCTTCAACCCTCAACAGTATCAAGCTTTACCTGTCATACAAAGCATGTTTGATGTGTTTCCCAGTGACATCACCCTTGAAGGCAATGGCTGGGACTACGTATTCATCAGAAAGAACTGTTCTTGCGCTGCTAATACCAAGAACTATGTATCCAACACCACTTTCACAGTGAAATTCACTCATGGTGGCTTTGTCAATGACTTGGTGATGGATGCTTATGAGGGGCTTGCTCTCTTGCCTAACACCAATCACTGGGCAAGTAATGGTTCTGTTATATCACTGAGGTTGTTCTGTGGCTGCTCAAGTAGACTCTGGAACTATTTGGTGAGTTATGTAATCAGAGATGGGGATAGCATTGAATCATTGGCGAGCCGGTTCGGGGTTAGTATGGATAGCATTGAGGCAGTGAACGGCATTGACAATTCTGATAATGTCATTGTTGGTTCACTGTTTTATATACCTCTCAATTCAATTCCTGGAAAGCCTTATCATTGGAACAATGACACTCCTCCAGTTCCTGTCCCTTCACCATCTTTTGATAATTTTACAGCTGATGAAGTCAATCATAATGCTAATGTGGTCTCTGGATGGATCATTGGGGGCTTAATGGTTGGCATTGCTCTTATAATATTGAGCATTATTCTGTGTACTATTCTGACTCTAAGATCATCAAAATGTATTGCTGAAGCAAGACATGAAGAAAAAGATGATGATGAGAGAAAGGCATCTCAGAAATTACATATTCTTGGGAAACCATGCTTCTTTTGTAGTTCTGGAGGGTACATGTGTGGCAAATGTACTTTGGATCAGGAGCAAGATGATGGTGAATCCAACAATCTCCAAATTACAATCTCAAAACCTTCAACTATAGGACCTGATATATTTGGCATGGATAAGCCTATAGTTTTAACATATGAAGAGATTTTTCACTCAACTAATGGTTTCTCTGATTCAAATCTGCTTGGACACAGAACATATGGTTCTGTTTACTATGGCCTACTTAGGGACCAGGAAGTTGCAATTAAAAGGATGAAAACTAGAAAAACTATAGAATCTACGATGACAGAATTGAAAGCTATGTGCAAGGTTCATCATGCTAATCTGGTAGAATTTATTGGCTATGCAACTAGTCATGATGATGAGATTTTCTTGATTTATGAATATGCTCAAAAGGGTTCACTCAGAAGCCATTTGCATGATCCTCAAAACAAGGGTCATTCGCCACTTTCTTGGATCATGAGGGTTCAGATTGCGCTTGATGCTGCTAGGGGACTTGAATACATACATGAGCATACAAAAGCTCACTATGTCCATCAAGATATCACCATAAGCAACATCTTACTTGATGCTTCCTTTAGAGGCAAGATATCAGATTTTGGGTTCTCAAAACTCGTAGCCAAAAGAAACGATGGAGAAGCTGCAACAAGAAAATTCGCTACTTCATATGGATATCTTGCCCCAGAGTACTTAAGAGATGGCCTTGCAACGACCAAAAGTGATGTCTATGCGTTTGGAGTTGTTCTTTTCGAGATCATATCAGGGAAGGAGGCCGTTATTCGAATTGAAGGCGTGGTGACAAACAATCCTGAAAGACGTCCACTGGCATCTGTTATGGTGTCGATTCTTAGGAGCACGTCAAGACTGAGAGACAACGTTGATCCTAATATGGTGAATCTGTATCCTTATGATAGTGTATTTAAGATGGCCATGCTTGCAAAACAATGTGTGGAGGAAGAACCCATCTTACGACCTGATATGAAGCAAGTTGTAATGTCCCTCTCACAGATCCTCCTCTCTTCTGCCGAGTGGGAAGCGACTCTAGCAGGGAAAAGCCAGGTTTTCAGCGGCCTTATTCTGGGGAGATAA 1908 0.4109 MSCTDTTRVCTSFLAFNPQQYQALPVIQSMFDVFPSDITLEGNGWDYVFIRKNCSCAANTKNYVSNTTFTVKFTHGGFVNDLVMDAYEGLALLPNTNHWASNGSVISLRLFCGCSSRLWNYLVSYVIRDGDSIESLASRFGVSMDSIEAVNGIDNSDNVIVGSLFYIPLNSIPGKPYHWNNDTPPVPVPSPSFDNFTADEVNHNANVVSGWIIGGLMVGIALIILSIILCTILTLRSSKCIAEARHEEKDDDERKASQKLHILGKPCFFCSSGGYMCGKCTLDQEQDDGESNNLQITISKPSTIGPDIFGMDKPIVLTYEEIFHSTNGFSDSNLLGHRTYGSVYYGLLRDQEVAIKRMKTRKTIESTMTELKAMCKVHHANLVEFIGYATSHDDEIFLIYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHQDITISNILLDASFRGKISDFGFSKLVAKRNDGEAATRKFATSYGYLAPEYLRDGLATTKSDVYAFGVVLFEIISGKEAVIRIEGVVTNNPERRPLASVMVSILRSTSRLRDNVDPNMVNLYPYDSVFKMAMLAKQCVEEEPILRPDMKQVVMSLSQILLSSAEWEATLAGKSQVFSGLILGR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61082g00004 635 SMART LysM_2 124 168 IPR018392 -
Stsc61082g00004 635 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 47 629 IPR044812 GO:0019199|GO:0045087
Stsc61082g00004 635 Gene3D Phosphorylase Kinase; domain 1 307 402 - -
Stsc61082g00004 635 ProSiteProfiles LysM domain profile. 123 167 IPR018392 -
Stsc61082g00004 635 Pfam LysM domain 125 168 IPR018392 -
Stsc61082g00004 635 Gene3D LysM domain 117 174 IPR036779 -
Stsc61082g00004 635 Pfam Protein tyrosine and serine/threonine kinase 333 607 IPR001245 GO:0004672|GO:0006468
Stsc61082g00004 635 ProSiteProfiles Protein kinase domain profile. 329 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61082g00004 635 SUPERFAMILY Protein kinase-like (PK-like) 307 607 IPR011009 -
Stsc61082g00004 635 FunFam PTI1-like tyrosine-protein kinase 3 403 621 - -
Stsc61082g00004 635 Gene3D Transferase(Phosphotransferase) domain 1 404 625 - -
Stsc61082g00004 635 ProSitePatterns Tyrosine protein kinases specific active-site signature. 450 462 IPR008266 GO:0004672|GO:0006468
Stsc61082g00004 635 SUPERFAMILY LysM domain 123 168 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61082g00004 Stsc-Chr61082 23307 26047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61082g00004 1 635 Receptor kinase-like Gene Family AT1G51940 56.434 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc61082g00004 PK_Tyr_Ser-Thr 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61082g00004 - - gmx:100796989 909.442