Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61073g00001 ATGCATAACAAGGAAGCTTGCTCTCCCTCCTCCAATGGCGGATTTGGCGCCAATACCGCCACAGGCGGAGGTCAAATGCAGTCCAATAGCGGCGCATTGGCTTCGTTCTATTCTGCTCTCTTGAACGACAATCCGTCGCTGGCGGCGAATAGCAGCAGCTCGCTTTACCCCTACCCTGAGTCTGGAACGCAGATCAACTCGTACGATTCTTGCGTGATACAGAAGCACCAAGACATGGTGAATCGTCACAGCATGTGCCTCAATCGCCTCGTGGAGACTTCCAAGGAGGTCGAAACTCTGCGGCAAGAGAACGCGCATCTCCGTGCGGTGAACAAGGAGCTCCAGAAGCAGCTCAACTTCGTCATCCAGGCTTCTCTGGAGAACCAATTCGGCGGTGGCTCCTCCTGCCAGGGTCAAACGACGCCGTTCGACGTGGTGCATGGATTCCGCGGGTTCCAGATTGGGGAAGGGAAAGAGAATTGCGGTGATTGGAATAGCAACAACACCAACAATAATAGCAATAACGGTAAGGAGCAAGAAGTTTCGGACGAGAGTCCAACGAGCGTGATTGAGAATAACGGCGTTGAAGTTGAGAGGTTCTCTCTGCCAAAGAGCATATCTGTGAGGTCCAATGGTTACTTGAAGATGGCTCAGACTGCTGCAGCGGCCACTACCACCAACACCACTACCTGTCGCACTAAGCCTACCACTCGCCCACGCGTCTCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTGCGTGGAGGGAAGACAGAGGAAGAGCCTCTTGAGATGGTGGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGCAATAAATGGCAGGAAACAGGGACATGCCCATATGGAGACCACTGCCAATTTGCTCACGGCATAGGGGAGCTTCGCCCAGTGATCCGCCACCCCCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTATGTCCATATGGGCATAGATGCCATTTTCGCCACGCACTCACTGAACAAGAGAAAGCTATATCACACCCTAAGTCCAGAACAATCAAGCTCGAAAGATAG 1074 0.5261 MHNKEACSPSSNGGFGANTATGGGQMQSNSGALASFYSALLNDNPSLAANSSSSLYPYPESGTQINSYDSCVIQKHQDMVNRHSMCLNRLVETSKEVETLRQENAHLRAVNKELQKQLNFVIQASLENQFGGGSSCQGQTTPFDVVHGFRGFQIGEGKENCGDWNSNNTNNNSNNGKEQEVSDESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQTAAAATTTNTTTCRTKPTTRPRVSSTPPDAVQKVYVRGGKTEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAISHPKSRTIKLER 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61073g00001 357 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Stsc61073g00001 357 FunFam Zinc finger protein 36, C3H1 type-like 1 307 343 - -
Stsc61073g00001 357 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Stsc61073g00001 357 MobiDBLite consensus disorder prediction 225 244 - -
Stsc61073g00001 357 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 347 IPR045877 GO:0003729
Stsc61073g00001 357 SUPERFAMILY CCCH zinc finger 270 305 IPR036855 GO:0046872
Stsc61073g00001 357 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Stsc61073g00001 357 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Stsc61073g00001 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Stsc61073g00001 357 Coils Coil 90 117 - -
Stsc61073g00001 357 FunFam zinc finger CCCH domain-containing protein 15-like 267 306 - -
Stsc61073g00001 357 MobiDBLite consensus disorder prediction 160 187 - -
Stsc61073g00001 357 SUPERFAMILY CCCH zinc finger 307 341 IPR036855 GO:0046872
Stsc61073g00001 357 Gene3D - 268 306 - -
Stsc61073g00001 357 Gene3D - 307 343 - -
Stsc61073g00001 357 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61073g00001 Stsc-Chr61073 1 2817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61073g00001 72 355 C3H Transcription Factor Family AT1G68200 51.027 2.09e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc61073g00001 zf-CCCH 2.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61073g00001 K18753 - gmx:100796550 455.292