Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61068g00001 ATGCATGGGTCCGGTCCTGAAGAGTGGAAACACAGCCGGCACATGTGGCCTGTACCTTCCAACGCCACCGCTGTAGCCCCTGATTCTTCACCGTCTGAATTTATATGCAAAGATGGACGCAAGATTCGTGTTGGTGATTGTGCACTTTTCAAGCCACCCCAGGATTCCCCACCTTTTATTGGAATAATTCGCAAGTTAATAGTTAATAAAGAAGAAAGTCCAACATTACAAGTGAATTGGCTTTACCGGCATGCTGATGTGAAGCTTGCCAAGGGCATATTGGAAGCTGCCCCAAACGAAGTCTTCTACTCCTATCACAAGGATGAAATATCTGCTGCATCATTACTCCATCNNNNNNNNNNGTGTAAAGTCGCTTTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCTGCGTTTGTCTGCAGGCGAGTGTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAAGATTACATTAATGCTGTTCAGGAAGAAGTTGACCAGTTATTAGATAAGACAAAACTAGAAATGCATGGGGCAGTGCAGTCAGGAGGCCGTTCGCCGAAACCTTTGAATGGTCCAACAACAACACAATCATTGAAATCTGGTTCTGATAGTGTTCAAAATAATTCTTCCCTTGGTGCACAGGGTAAGGGAAAGAAGAGAGAAAGGGTTGATCAGGGATCTGATTCATATAAAAGAGAGCGCTTGTCTAAAGCAGACGATGGGGATTCTGGACAGGTTAGACCTGAGAGCATTTTGAAGTCTGAGATTGCTAAAATTACCGACAAAGGTGGGCTTGTAGACTTTGAAGGAGTTGAAAGACTTGTTCATCTCATGCAACCTGAAAATGCTGATAAAAGAATAGATTTGGCAGCACGAATTATGCTTGTTGATGTAATAGCAGCTACAGACCGTTATGACTGTCTTGGTTGGTTTGTACAGCTTAGAGGTTTGCCTGTGTTGGATGAATGGCTCCAAGAGGTCCACAAGGGGAAAATTACTGACAGTAGTAACCATAAAGAAAGTGACAAATCCGTGGAGGATTTTTTGTTAGCGTTGCTTCGTGCATTGGATAAGCTTCCTGTTAACCTTCATGCATTACAAACATGCAATGTTGGGAAGTCTGTCAACCATTTACGCACTCACAAAAATTCTGAAATTCAGAGGAAAGCTAGGGGTTTAGTAGATACTTGGAAGAAACGCGTTGAGGTTGAAATGAATATGACCGATTCAAAGTCTGGTTCTACTCGTCCTGTGTCGTGGCAGGTAAAGCCAGCAGCTTCTGAGGTCTCTCATGTTGGAAACAAGAAAACTGGAGGATCTGAGAATGCTGCAAAGGGCTCTGCAATTCAGCCCTCAGTATCCAAAAGTTTGTTGGCTAAGCATGGTTCTGTGGAGGCATTGTCGAAGTCCTCTTCAGCTCCTGGTTCAATTAAGTCGATGACGACCTCAGCAACTAAAGAACAGAATGCTAAGGTGTTAGTTGGTGCAGCAGCATCAGATCAACCATTGACACCTATCAAGGAGGAAAGGAGCAGCAGTTCTAGTCACTCCCAAAACAACAGCTTTTCTTGTTCTAGTGAGCATACAAAAACTGCTGGGTCTTGTCGGGAAGATTCAAGGAGCTCCACTGCAGTGTCAATGAGTGTGAGCAAAATGTCTGGTGGTGCATCTCGAACTCGGAAATCAAGCAATGGTGTACATGGGACTGGTGGATCTTTTGCTCAGAAGGAGCCCACTACTGCAAAAAGTTCCTCTAGAAATCCACCTTCTGAAAAAGTTTCCCCAACTCGAGTATCCCATGAAAAATCTCCTGATCAGCCACTTATCGATCAAGGGAATAATAATCAGCGTCTGATCCTCAGGCTGCCAAATACTGTTCGCAGTCCTTCTGGTGCTAATGGTGGCTCTTCTGAAGAACCTGCTATTGCTTGTGCGAAAGCTTCACCTCCTGCTGACAAGAATGAGTCTCAGGATAGAAGAGTGAAAGCTAAGACTGATGGTTTGCATACCATTGCTTCATCAAATGTGATAACTGATGCTTGCGCTACTGATGAAGTATCAACTGGTTGTGAGGATGGTAATGGTTCTTCTTTGGTTGATGAACGCAGAAGGGTTAATGAAGATGGTGATAAAGTAGCTGAAACATCAAAACAAACTAATTCCCCTTCAGGTTTTATTTCCAGATCTGGGCAGACTTATGATGCATCTTTAAGCCCAATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCTGAAGCAAGTGCCTCTGTGTCCCCTGGAGATGATGGGATGAACTTACTTGCTTCTGTAGCTGCAGGGGAAATATCCAGATCTGATAATGTCTCACCTCCGGCTTCACCTGAGGGGAAGTCACCCGTGGCAGATGAATCAAGCTCAGCTAATGTTTCTAAGTTAAAACATCTGGCTGAAACAGCTGCTCATCCTGTTGCACAATCTGATGGAGGGGCTGCCGAAGAGTCTCAATTGAGTGCTGTTGAGTCATTGCAATTTAAAAAGGATTCAGGTCCCCCTGCGACAACAATGTTGCGTGATTCTTCTGTAGACGAAGCTATTTCATCCAGTTGTAAAGAGAAATCGGGTGATAACAGAGCTCAAATGAATTGCTCATCTGCAGATTTGTCACAAAATGCCGAAGCTGTATGCCCACAGCTGGAAACTGTTGAGGATGCTTCTGAATCTGTGCTACCTAATAAAAAGGAGACTCAGGACCAATCTCATGAGCAGAGGGAATTTGGAAGTCAATGGGCTAAATGTAGCGCTTCAGACTCTAAGCCGGTCAAGGTTGATCACTTAGATGAGACAATCCTGGAGAATGGTAAAATGTTTGTTTCAAAAGAAACTGTTGCAACTGTAAAGGTTGAAAAGGAGGTAGGTGAAAAATTACCTGAGTTATCTTCAGATGTAGGTAATGATAAGAAGATTAGTGTGGAGCAAGCGACGGTTACTTCTATATCATCTCAAAAGTCTTCTCCAGTTACAGAAAATTGTGAGGCTCCAGATTTTAAAAAAGAGGATGTGGCTCCACCCACTGCTTCAGGTAATTCTATGATTGCATCCAGGGATGAACATGCAAATGAGATGAAGCTGGATGCCACTGAACCTGATGAAAAACGGATGGATCAAGAGTCAGCAGTTTCAGCTGAAGTTAGTGGATGTAATGAAGATAATGCTGGCAGGAAAGAGGTTCTTCGACAATGTTCTGGGTCATCAAATCACCCAGAGTTGTCTAAAGTTCCTGGGAAAGAAAATGAAGCGGTCAAAACCTCTGAGTGTAACTCAGATGGGAATGATTCTCATGTTGCAGGAGAGCATACCTGCAGTATTAATCCATCCAGCACTGTTTCTGGGTCTGATGCAGCCAGAAGATTGGACTTCGATTTAAATGAGGGCTTCCCTGTTGATGATGCAAGCCAAGGGGACATTGCTAGACAGGAAGAACATATCACATCATCTGCAGTTCGAAATCCTACATTGCCTTTCCCTATTTCGTCGATCCCTGGGGGATTCCATGCAACAATTACAGTGGCATCTGCTGCCAAGGGTCCTGTTGTTCCCCCGGAAAACCCATTGCGCAGTAAGGGTGAACTTGGATGGAAAGGCTCTGCTGCTACAAGCGCCTTCCGGCCAGCTGAACCTAGGAAAAATGTAGAGGCTTCATCAACAACTAGTGATATTCCTTCTGTTGATTCCACTCCTTTGAAACAAGGCCGTGCTCCTTTAGATTTTGATTTAAATGTTGCTGATGATAGAAGTTTTGACGATTTAGGTTCCCATGGTTCTTTAGAATCTGGGCCCCCGGATCGCACCACGATGGGACTTGATCTTGATTTGAACAGAGTTGATGAGACTCCTGATGCTGTTCCTTTCTCTATGAGTAAACTTGATGTTCCTGCTTTGCCAAGTAAGTCTTCACTGTCTGGTGGGTTATCTAATGGTGGAAGTGTGTCAAGAGACTTTGATTTGAATAATGGACCAGGCCTTGATGAAGTTGGCATGGAAGTGCCAGCTCGAAGTCAGATGAAAAATAGTGCACCATTTCCGTCTGCTATCCATGGTACTAGAGCCAACAATGCTGAATTTGGGAATTATTCATCATGGTTTCCTCCAGGAAATTCTTATCCTGCAATTACTGTCCCTCCACATCTTTCTGGTAGAGGTGATCAGAGTTATGTTGCAGCTGCTGCAGCACAGCGACTCATGGCTACAACCGGTAGCAGTTCCTTTGGTCCAGAGCTGTACAGGGGGCCAGTGCTTTCATCCTCTCCTGCTGTTGCTTACCCACCTACTGCACCCTTTCCATATCCAGGAGGATTTCCATTCGAGACCAGTTTTCCGTTATCTTCAAACTCATTTTCTGTTGGTTCAGCAGCATTTATGGATTCATCCACTGTTGGTGGACTATGTTTTCCTACCATGCAGTCTCAGCCAGTTGGACCTGGTGGTGTTGTCTCCTCAACGTATCCCCGCCCATATGTCATGAGTCTTGCAGGTGGTACAAGTAACGTGATTCCCGACAATCGAAAATGGGGAAGTCAAAGTCTGGATCTCAATTCAGGCCCTGGTGGTACAGATACAGACCGGAGAGAGGATAGATTGCCTTCTGGGTTGAGGCACATGCCTGCTCNNNNNNNNNNCAATTCACAATCCTTGATGGAGGAACACATGAAGATGTTTCAGGTGGCAGGTGCATTGAAGAGGAAAGAACCTGATGGTGGTTGGGATGGAGCTGATAGATTTAGCTACAAACAGCCCTCATGGCAGTAG 4800 0.4429 MHGSGPEEWKHSRHMWPVPSNATAVAPDSSPSEFICKDGRKIRVGDCALFKPPQDSPPFIGIIRKLIVNKEESPTLQVNWLYRHADVKLAKGILEAAPNEVFYSYHKDEISAASLLHXXXXCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYINAVQEEVDQLLDKTKLEMHGAVQSGGRSPKPLNGPTTTQSLKSGSDSVQNNSSLGAQGKGKKRERVDQGSDSYKRERLSKADDGDSGQVRPESILKSEIAKITDKGGLVDFEGVERLVHLMQPENADKRIDLAARIMLVDVIAATDRYDCLGWFVQLRGLPVLDEWLQEVHKGKITDSSNHKESDKSVEDFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARGLVDTWKKRVEVEMNMTDSKSGSTRPVSWQVKPAASEVSHVGNKKTGGSENAAKGSAIQPSVSKSLLAKHGSVEALSKSSSAPGSIKSMTTSATKEQNAKVLVGAAASDQPLTPIKEERSSSSSHSQNNSFSCSSEHTKTAGSCREDSRSSTAVSMSVSKMSGGASRTRKSSNGVHGTGGSFAQKEPTTAKSSSRNPPSEKVSPTRVSHEKSPDQPLIDQGNNNQRLILRLPNTVRSPSGANGGSSEEPAIACAKASPPADKNESQDRRVKAKTDGLHTIASSNVITDACATDEVSTGCEDGNGSSLVDERRRVNEDGDKVAETSKQTNSPSGFISRSGQTYDASLSPMNALVESCVKFSEASASVSPGDDGMNLLASVAAGEISRSDNVSPPASPEGKSPVADESSSANVSKLKHLAETAAHPVAQSDGGAAEESQLSAVESLQFKKDSGPPATTMLRDSSVDEAISSSCKEKSGDNRAQMNCSSADLSQNAEAVCPQLETVEDASESVLPNKKETQDQSHEQREFGSQWAKCSASDSKPVKVDHLDETILENGKMFVSKETVATVKVEKEVGEKLPELSSDVGNDKKISVEQATVTSISSQKSSPVTENCEAPDFKKEDVAPPTASGNSMIASRDEHANEMKLDATEPDEKRMDQESAVSAEVSGCNEDNAGRKEVLRQCSGSSNHPELSKVPGKENEAVKTSECNSDGNDSHVAGEHTCSINPSSTVSGSDAARRLDFDLNEGFPVDDASQGDIARQEEHITSSAVRNPTLPFPISSIPGGFHATITVASAAKGPVVPPENPLRSKGELGWKGSAATSAFRPAEPRKNVEASSTTSDIPSVDSTPLKQGRAPLDFDLNVADDRSFDDLGSHGSLESGPPDRTTMGLDLDLNRVDETPDAVPFSMSKLDVPALPSKSSLSGGLSNGGSVSRDFDLNNGPGLDEVGMEVPARSQMKNSAPFPSAIHGTRANNAEFGNYSSWFPPGNSYPAITVPPHLSGRGDQSYVAAAAAQRLMATTGSSSFGPELYRGPVLSSSPAVAYPPTAPFPYPGGFPFETSFPLSSNSFSVGSAAFMDSSTVGGLCFPTMQSQPVGPGGVVSSTYPRPYVMSLAGGTSNVIPDNRKWGSQSLDLNSGPGGTDTDRREDRLPSGLRHMPAXXXXNSQSLMEEHMKMFQVAGALKRKEPDGGWDGADRFSYKQPSWQ 1599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61068g00001 1599 CDD TFIIS_I 331 407 - -
Stsc61068g00001 1599 ProSiteProfiles BAH domain profile. 40 157 IPR001025 GO:0003682
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1196 1289 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1079 1132 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 429 454 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 496 672 - -
Stsc61068g00001 1599 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 311 419 IPR035441 -
Stsc61068g00001 1599 Gene3D - 24 262 IPR043151 -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1309 1346 - -
Stsc61068g00001 1599 ProSiteProfiles TFIIS N-terminal domain profile. 323 409 IPR017923 -
Stsc61068g00001 1599 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 276 409 IPR035441 -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 220 251 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 720 737 - -
Stsc61068g00001 1599 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1599 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 611 640 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1033 1054 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 897 927 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 997 1054 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 657 671 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1577 1599 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1515 1548 - -
Stsc61068g00001 1599 SMART BAH_4 40 157 IPR001025 GO:0003682
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 510 599 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 904 919 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 180 254 - -
Stsc61068g00001 1599 SMART TFS2_5 329 408 IPR003617 GO:0005634
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1101 1130 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1515 1532 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 191 219 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 711 737 - -
Stsc61068g00001 1599 Pfam TFIIS helical bundle-like domain 357 406 IPR017923 -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 438 454 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1309 1330 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 759 863 - -
Stsc61068g00001 1599 MobiDBLite consensus disorder prediction 1227 1242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61068g00001 Stsc-Chr61068 2915 10848 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc61068g00001 Med26 8.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61068g00001 - - gmx:112998769 2135.53