Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61065g00002 ATGACTAGAAGGAAGTCAAGCCCTGGATACATAGAAAACAACTCAAGGAGAAGGGCAATATTTAGGGCAAGGAAGGGTAGCTTGATGAAAAAGATGGATGAGATTAGCACCCTTTGTGGTGTTGAATCTTGTGCTATCATCTACCCTGAGAATGAACCTGAGCCAGTGATTTGGCCATCACCAGAGAAGGCCAAAGAGGTCATTTCCAAGTTCAAGGAAAAGCCCAGATTGGAACAAAACAAGAGAACGCTAACTCAGGAAACTTTGCTAAAGAAAAGAATCCAGAAGGCTGAAGACCAGCTAAAGAAACAAAGGGATGACAATAGGCAGAAAGAGATGACCCATCTCATGTTCCAATGCTTGAGCAAGGGTGGAATCTCTGGAAATAATGTTAGCTTGATTGATCTTAGTGATCTCTCAAGGCTAATTGATCAGACTCTAAAGGAAATTGATCTGAAGATTGAAAAGATTGAAGGTCAAGATCAAGAGGAAGAAACACAAACCAAACCTTGA 513 0.4113 MTRRKSSPGYIENNSRRRAIFRARKGSLMKKMDEISTLCGVESCAIIYPENEPEPVIWPSPEKAKEVISKFKEKPRLEQNKRTLTQETLLKKRIQKAEDQLKKQRDDNRQKEMTHLMFQCLSKGGISGNNVSLIDLSDLSRLIDQTLKEIDLKIEKIEGQDQEEETQTKP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61065g00002 170 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc61065g00002 170 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Stsc61065g00002 170 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Stsc61065g00002 170 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Stsc61065g00002 170 PANTHER MADS BOX PROTEIN 10 123 - -
Stsc61065g00002 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Stsc61065g00002 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc61065g00002 170 Coils Coil 87 114 - -
Stsc61065g00002 170 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61065g00002 Stsc-Chr61065 19412 19924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61065g00002 1 163 Type I MADS-box Gene Family AT5G48670 43.558 4.65e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc61065g00002 SRF-TF 8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61065g00002 - - gmx:100816084 173.326