Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61057g00001 ATGAGCGATCACTTGGTGCTCTTCGTCGACCGTCTCGGGCACCCCGCCGATCCCGTCGCACAACCGGCGCAGCTCCCAGCTGATCCCTCGCCGATGCCGGAGGAAGGAGTCGCCGGGCCATCTGGATCCGCTCCGGAAGCGGATCGCGACGTTGAGTCAGAACGCGGCGGCGATGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATTTGCCAGGAGGAGGACGGTGTCTCCAATTTGGAAAGCCCCTGCGCCTGCAGCGGAAGTCTCAAGTATGCACACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGTTATACTGCTCCACCACCGCGCCCTCAGCCCGAAGAAACTACCATTGACATAGGTGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTATTGGCAATTGCAGAGGCCGAACGTCAATTTTTGGATGCTGAATATGATGAATATGCTGCTTCCAATGCCAGTGGAGCTGCATTTTGTCGCTCTGCAGCGTTAATTTTAATGGCCCTTCTACTCTTACGGCATGCACTTTCTGTTACTGATGGTGATGCTTCTGATGATGACCCATCCAATTTTTTCTCCCTTTTCTTGCTTCGTGCTGCTGGATTTCTTTTACCTTGCTATATCATGGCTTGGGCAATTAGTATTCTGCAACGTCGGCGGCAAAGACAGGAAGCTGCAGCACTAGCAGCAACCCAAGTCGCCTTCGTTCTACAGTCTGGGCAGCACAGGGGGCTACAATTTGCCATAGCCCCAGGACCACCACCCACAGTACAGCAGGAACAAGTGTAG 870 0.5368 MSDHLVLFVDRLGHPADPVAQPAQLPADPSPMPEEGVAGPSGSAPEADRDVESERGGDDEEEPLIQMAECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPGPPPTVQQEQV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61057g00001 289 SUPERFAMILY RING/U-box 68 120 - -
Stsc61057g00001 289 Coils Coil 158 178 - -
Stsc61057g00001 289 MobiDBLite consensus disorder prediction 15 63 - -
Stsc61057g00001 289 CDD RING_CH-C4HC3_MARCH 70 116 - -
Stsc61057g00001 289 SMART ringv_2 69 116 IPR011016 GO:0008270
Stsc61057g00001 289 FunFam RING/FYVE/PHD zinc finger protein 58 126 - -
Stsc61057g00001 289 Pfam Protein of unknown function (DUF3675) 121 240 IPR022143 -
Stsc61057g00001 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 250 IPR033275 -
Stsc61057g00001 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 125 IPR013083 -
Stsc61057g00001 289 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Stsc61057g00001 289 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61057g00001 Stsc-Chr61057 27539 30531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61057g00001 29 119 C3H Transcription Factor Family AT2G22120 36.170 1.28e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61057g00001 - - gmx:100779674 469.544