Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61056g00001 ATGCTGGTCATTCTTGACATTTTAGTGCAATACCCTAACATAGTTGTTGATGATGCTGTGGAGCCGGATGAGAATGAAACTCAGAAGGGTCCTGACCATAGTGGACCGATTCGTATTTGGGGAAATTTGGTGGCTTTCTTGGAAAGAATAGATGCCGAGTTTTTCAAGAGTTTGCAGTGCATAGATCCGCATACCCGTGAGTATGTTGAGAGACTCAGGGATGAGCCAATGTTTCTTGTTCTTGCTCAGAATGTCCAGGAATACCTTGAAAGGGTTGGAGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTTGTTTACTACAAACCACAGGAGGTTTATGATGCCATGAGAAAATTGGCCGAGTTGGATGAAGATGGTGATAATGAAGGGGCTGGTGAAGAGAAAGGGTTTGAGGATACAAGAATCCCGACTCCATTTATTGCTACTCCTGAGCTTGTGCCCCGCAAACCTACCTTCCCTGAGAACAGCAGGACTCTAATGGACATATTGGTTTCCCTGATATACAAGTATGGTGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGACATATACCACCATGCTCTTCTTGATGAGTTCTCGATATCTCGTGATCTGCTGCTCATGAGCCACTTGCAGGACAGTGTTCAGCATATGGACATATCAACGCAGATACTGTTTAACAGGGCTATGGCACAGTTGGGCCTATGTGCTTTTCGGGTTGGGTTGATTTCTGAAGCACATGGCTGTTTATCCGAACTTTATTCAGGTGGTAGGGTGAAGGAGTTGCTTGCACAAGGTGTGTCACAGAGTCGATATCATGAAAAGACACCAGAACAGGAAAGGTTGGAAAGGAGGCGTCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGGCAGTGCATCTTACAACCGCAATGCTGCTCGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGTGCAAAGTCATTAGTAAGAATTTCCGCCGCCTACTTGAGGTCAGCGACAAGCAAACATTTACTGGTCCGCCTGAAAATGTGAGAGACCATGTTATGGCTGCAACAAGAGCTCTCACCAAAGGAGACTTCAACAAGGCTTATGACATTATTGCGTCTCTTGACGTTTGGAAATTTGTTAGAAACCGAGACACAGTTCTTGCAATGCTGAAAGATAAGATCAAGGAGGAGGCATTGAGGACGTATCTCTTTACCTTCTCCTCATCTTATGATTCTTTGAGTCTTGACCAACTCACAAAAATTTTTGATCTCTCTGTTCCTCATACTCACAGCATTGTTAGTAGGATGATGATCAATGAAGAGCTTCATGCAAGCTGGGATCAGCCAACTGGCTGCATTATTTTCCAGGATGTGGAGCACTCTAGGTTGCAGGCCTTGGCATTCCAGTTAACAGAGAAGTTATCCATCCTTGCCGAGAGTAATGAAAGAGCAATGGAGACAACGATAGGTGGTGGTGGATTGGATCTTCCTATGAGGCGTAGAGATGGCCAGGACTATGCTGCTGCTGCTGCCAGTGGAACCACCACTGGGGGTGGCAGGTGGCAGGAGTTGTCGGGTTCTCAGACAAGGCAAGGTGGAGGGCGATATGGTAGTGGAGGTGGAAGGCCATTGGCTTTAGGCCAAGTAGCTGGGGGTGGATATTCGAGGGACCGAGCAGGACGGGGATCTGGTCGGTATCAAGATTCTGCATATGGCAGTTCAGGGAGGACCCAGGGTGGTTCATCATTGAGGGGACCGCATGGTGATGTATCATCACGCATGGTTAGCCTCAAGGGAGTGCGTGCTTAA 1830 0.4699 MLVILDILVQYPNIVVDDAVEPDENETQKGPDHSGPIRIWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPMFLVLAQNVQEYLERVGDFKAASKVALRRVELVYYKPQEVYDAMRKLAELDEDGDNEGAGEEKGFEDTRIPTPFIATPELVPRKPTFPENSRTLMDILVSLIYKYGDERTKARAMLCDIYHHALLDEFSISRDLLLMSHLQDSVQHMDISTQILFNRAMAQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLTTAMLLEVPNMAANVHDAKCKVISKNFRRLLEVSDKQTFTGPPENVRDHVMAATRALTKGDFNKAYDIIASLDVWKFVRNRDTVLAMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSVPHTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQALAFQLTEKLSILAESNERAMETTIGGGGLDLPMRRRDGQDYAAAAASGTTTGGGRWQELSGSQTRQGGGRYGSGGGRPLALGQVAGGGYSRDRAGRGSGRYQDSAYGSSGRTQGGSSLRGPHGDVSSRMVSLKGVRA 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61056g00001 609 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 1 327 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc61056g00001 609 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 604 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc61056g00001 609 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 396 484 IPR000717 -
Stsc61056g00001 609 MobiDBLite consensus disorder prediction 516 541 - -
Stsc61056g00001 609 ProSiteProfiles PCI domain profile. 295 467 IPR000717 -
Stsc61056g00001 609 SUPERFAMILY "Winged helix" DNA-binding domain 391 466 IPR036390 -
Stsc61056g00001 609 Gene3D - 403 471 IPR036388 -
Stsc61056g00001 609 MobiDBLite consensus disorder prediction 574 592 - -
Stsc61056g00001 609 MobiDBLite consensus disorder prediction 513 609 - -
Stsc61056g00001 609 Pfam PCI domain 335 463 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61056g00001 Stsc-Chr61056 1243 5417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61056g00001 1 609 Eukaryotic Initiation Factors Gene Family AT3G56150 71.078 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61056g00001 K03252 - gmx:100805203 993.416