Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61047g00006 ATGCAGGGTACTAATGATAAAAATAATGGTAACAGCTTCTCCTTCCCACCCTACATGAATGTTGATCATCATCAACATCAAGCTGCTGCTCCTGCTGTTACTACAACACATGAACCACTGATTTCTCAATCTCAACAAACTGAATTCATGTTTTCTCATCCTAATAATAATTGCCTCGCTGCTGATGATTGGACTCTCAAAGAACATGAGTTATTTATGAAGGGACTAAGCAAGTATGAAATAGGAGATTGGAATAAAATAGCCAGCCATTATTTGAATAACAAGACACCTCAGCAAGTTCAGAGCTATGCTAATAACTTCTTCTACAATAGCTTTGGAAGAAGAAGAAACTCATCACCCTCAATATACTCTCCTTCTTCTTCTACTGCTAGTTTCAGGACTTATTCTTCAGGAACAATAACAATAGTGATGAGCCAATTAAGAAACGCTGATGCTTTTTCCTGA 465 0.372 MQGTNDKNNGNSFSFPPYMNVDHHQHQAAAPAVTTTHEPLISQSQQTEFMFSHPNNNCLAADDWTLKEHELFMKGLSKYEIGDWNKIASHYLNNKTPQQVQSYANNFFYNSFGRRRNSSPSIYSPSSSTASFRTYSSGTITIVMSQLRNADAFS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61047g00006 154 ProSiteProfiles Myb-like domain profile. 64 108 IPR001005 -
Stsc61047g00006 154 CDD SANT 64 108 IPR001005 -
Stsc61047g00006 154 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Stsc61047g00006 154 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 44 123 IPR043363 -
Stsc61047g00006 154 SMART sant 60 110 IPR001005 -
Stsc61047g00006 154 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Stsc61047g00006 154 SUPERFAMILY Homeodomain-like 63 110 IPR009057 -
Stsc61047g00006 154 Gene3D - 62 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61047g00006 Stsc-Chr61047 26405 27461 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc61047g00006 Myb_DNA-binding 3.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61047g00006 - K11649 adu:107478694 95.9005