Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61047g00002 ATGTCCTCCACCAACGTCGTTGTTCTAGACAACGGCGGCGGTCTCATCAAAGCCGGCTTCGGCGGTGAACGCGACCCCGCCGCCATTCTCCCTAACTGCCTCTACCGCTCTCCCGCCTCCAAGAAATGGCTTCATCCACACCCTCTTCCCCCCACAACTTCCACTGATTCCGCCGCCTCCGAGCCCGACCTCACCTCCGCCGCCGTACGCCGCCCCTTCGACCGGGGCTACCTAATAAACTCCGATCTCCAACGAGAAATCTGGTCGCACCTCTTCTCATCAATCCTCCGCATAAACCCAACACAATCCTCTCTTCTCGTCACCGAACCCTTGTTCACTCTTCCCTCCATTCAGCGCTCCCTCGACGAGCTCGTGTTCGAAGATTTCAATTTTAGGGCACTGTATGTGGCAGATTCTCCCTCACTGGTGCACCTGTACGAAGCAAGTCGCAGGCCCGATGGGCTTGTGTCACGGGCCCAGTGCAGCCTTGTTGTTGATTGTGGATTCTCTTTCACGCATGCTTCGCCTGTGTTTCAGAACTTCACGCTTAATTACGGTGTTAAGAGAATCGATTTGGGTGGGAAGGCGCTTACTAATTACCTGAAGGAGCTTGTTTCGTTTCGGTCTGTTAATGTAATGGAGGAGACCTTCCTCATTGATGATGTCAAAGAGAAGCTCTGTTTCGTCTCCCTCGATGTGCCCCGCGACCTTCGCCTTGCCAGGGAAAGTGGAAGACAGAATCCCTTCAGATGCACATATGTGCTTCCCGATGGTATCACGTACACAAGGGGTTTTGTTAAGCATCCAGAACGAATACACAACTATCTTGCCTTGAAGGCTGGTAATGGTGGCTTTCCTCCTGTTCCAGAGGAAACAAAGGAGAATATCAATCACCTAGAAATGGCTGAGTTGCCTCAAGACCGAAACAGAGTTGACTTGTCGAAAAATGAATTTGATTTGACAAACGAACGGTTTCTTGTCCCTGAGATGATCTTCCATCCTGCCAATTTGGGTATGAATGAAGCTGGGCTAGCAGAATGTATTGTTCGAGCTGTCAATTCGTGTCATCCACACCTCCACCCTGTACTCTATGAAAGCATAATTTTAACCGGTGGAAGCACTCTATTTCCTCAGTTTGCTGAGAGATTAGAGAAGGAGCTCCGGCCGCTCGTTCCTGATGACTATCATGTGAAGATAACTACTCAAGAAGATCCCATACTAGGTGTTTGGCGTGGAGGATCTCTGTTGGCGTCAAGTCCAGATTTTGAAGCAATGTGTGTAACCAAGTCTGAGTATGAGGAGCATGGTTCTGCTAGATGCCGCAAGAGATTCTTTCATTAA 1341 0.4996 MSSTNVVVLDNGGGLIKAGFGGERDPAAILPNCLYRSPASKKWLHPHPLPPTTSTDSAASEPDLTSAAVRRPFDRGYLINSDLQREIWSHLFSSILRINPTQSSLLVTEPLFTLPSIQRSLDELVFEDFNFRALYVADSPSLVHLYEASRRPDGLVSRAQCSLVVDCGFSFTHASPVFQNFTLNYGVKRIDLGGKALTNYLKELVSFRSVNVMEETFLIDDVKEKLCFVSLDVPRDLRLARESGRQNPFRCTYVLPDGITYTRGFVKHPERIHNYLALKAGNGGFPPVPEETKENINHLEMAELPQDRNRVDLSKNEFDLTNERFLVPEMIFHPANLGMNEAGLAECIVRAVNSCHPHLHPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDYHVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEEHGSARCRKRFFH 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61047g00002 446 SUPERFAMILY Actin-like ATPase domain 3 145 IPR043129 -
Stsc61047g00002 446 FunFam Actin-related protein 6 137 197 - -
Stsc61047g00002 446 Gene3D - 7 136 - -
Stsc61047g00002 446 MobiDBLite consensus disorder prediction 45 64 - -
Stsc61047g00002 446 Gene3D - 342 408 - -
Stsc61047g00002 446 Gene3D - 409 437 - -
Stsc61047g00002 446 Pfam Actin 3 445 IPR004000 -
Stsc61047g00002 446 Gene3D - 137 197 - -
Stsc61047g00002 446 SUPERFAMILY Actin-like ATPase domain 160 445 IPR043129 -
Stsc61047g00002 446 FunFam ARP5 actin-related protein 5 homolog 342 408 - -
Stsc61047g00002 446 CDD NBD_sugar-kinase_HSP70_actin 7 204 - -
Stsc61047g00002 446 FunFam Actin-related protein 6 198 259 - -
Stsc61047g00002 446 Gene3D Actin; Chain A, domain 4 314 341 - -
Stsc61047g00002 446 SMART actin_3 4 445 IPR004000 -
Stsc61047g00002 446 Gene3D Actin; Chain A, domain 2 34 72 - -
Stsc61047g00002 446 FunFam Putative actin-related protein 5 409 437 - -
Stsc61047g00002 446 PANTHER ACTIN 7 437 IPR004000 -
Stsc61047g00002 446 Gene3D Actin; Chain A, domain 4 198 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61047g00002 Stsc-Chr61047 10855 13274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61047g00002 7 445 Cytoskeleton Gene Families AT5G09810 26.196 1.08e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61047g00002 K11662 - gmx:100819827 703.36