Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61045g00001 ATGGGACAGCTTCCTTCCAAGGACATTTTAGCATTGCTGGAATTTAAGAAAGGCATCAAGCATGACCCTACTGGTTATGTCCTCAATTCATGGAATGAGGAATCCATTAACTTTGATGGATGTCCTTCTTCGTGGAATGGAGTGCTGTGTAATGATAGTGATATTGTTGGCATTGTTCTTGACAACCTTGGTTTATCTGCTAATGCCAACTTAAGTGTTTTCTCCATCCTCAAAAAGCTTGTAAAACTCTCCATGTCCAACAACTCAATATCAGGAAAACTTCCTGATAAAATTGATGACTTAAAGAGCCTTGAAATTCTAGATTTATCCAATAATCTTTTCTCTTCGTCCTTACCGTCTGGAATAGGTACGTTAGCTGGCTTGAGAAATCTGTCATTGGCAGGAAACAACTTCTCTGGTCAAATTCCTGACTCTATTTCAGGAATGGCTTCAATGCAGGCTTTAGACTTGAGCCGCAATTCCTTTTCTGGGACACTGCCACCATCATTGACTAAGCTTACCAGCCTGGTATTGCTTAATTTATCCCATAATGGCTTTACTGGAAAAATTCCGAAAGGTTTTGGGTTGATATATTCTCTTGAAAAAATTGACTTGCATGGAAATAAGCTTGATGGTGATTTGGACACTGAATTTATATATTTTACAAGTGCAAGCTATGTTGATTTCAGTGACAACATGCTAGTAAGTTCAAAGTCACAGCAGCAGAAATTTCTAGCACAAATATCTGAAAGCATTGAACATTTGAATCTAAGCCACAACAAGCTTACCGGGTCATTAGTTAGGGGAAGTGAGCAACCGGTTTTTGAAGGCTTGAAGATGTTGGATCTCAGCTACAATCAGTTGTCTGGAGAATTGCCTGGATTTGATTTTGTTTATGAACTTCTGGTTCTTAAGCTTAGCAACAACAGATTTTCAGGATTTATTCCCACTGGCCTTCTGAAAGGAGACTCTTCAGTTTTAACCGAACTTGATTTAAGTGGCAACAATCTCTCAGGCGAAATGAGTATAATTACATCAACAACACTGCACTTTCTTAATCTCTCTTCAAACGGGATCAGTGGTGAACTGCCACTGCTCACTGGAAACTGTGAAGTACTTGATTTGTCTAATAACAAATTAGAAGGAAATTTATCCAGGATGATGAAATGGGGAGATATCAAATATCTTGATCTAAGTAGGAATCACTTGACAGGACCCCTCCCCCAGGTAACACCTCAATTTTTGCAACTAAACTATCTGAATCTCTCCCATAATTCTCTTAGCAGCTTGCTTCCGAGAGTCTTTACAAAGTATCCAAAGCTCAAAGTCCTTGATGTTAGTTCTAACCATTTATATGGAGTATTTCTAGCTGATCTTCTTGCAGTTCCCACTTTGCATGAACTCCATCTTGAAGATAACATGTTATCTGGTGGCCTTAATTTATCATCCATTTCCAAAGTTCAATCTGATCTTCAGATTCTTGAACTTTCTCATAATAAGCTTAATGGTCATTTTCCTGATGATTTTGGGTCATTAATTGGCTTGAAAGTGCTGAATATTGCAGCAAATAATTTTTCTGGTTCTGTTCCGACTACCATTGCTGACATGAAATCACTAGACACTTTGGATATATCAGAGAATCTTTTTACGGGTCCTTTACCAATTAACATGCCAAAGGGACTAAAATATTTTAATGCTTCAAATAATGACCTCTCTGGAGTTGTCCCAGAAGATCTTAAGAAGTTCCCTGATTATTCTTTCTATCCTGGGAATGCTGGATTGCATTTTCCAAATGATCCTTCTGGCTTAATCAATAAACCAGATGAAAGTTCCAATAGAAAGCCAATAAGCACTATAGTTATAGTGTCAAGTTTGGTTGCTCTTGTCCTATTACTCCTGCTTGCTGTCTTTATATACTACAAAAGAGTATCAAGATCTCGACGAGGATATGTAGGTAAGGATATAAGTGAGCATGCTCAGTCACATGTTGCTGGCCTGGGTCGTCCAAAAGACTTGGGTGGTGTGTCGGTTGTATCAGTCAAGGATCATGTTCTCCCGCTGACAGAAAAATCTGCAAAAATGGATGAAAATATGGCATCTGTGTCTGGGCTCTCCCCATCAAAACACATCCACTTTTCATCACCAGGGTCCAGCGATTCATCTACTGCCGAAAACATTGCAAGACTATATGCAAGATCACCAGATAAGTTGATAGGAGAGCTGCATTTTCTTGATGATACAATAACACTGACACCTGAGGAGCTATCAAGGGCCCCGGCTGACGTTTTGGGGAGAAGCATTCATGGTACATCTTACAAGGCAACTCTGGTGAATGGTTTATTACTTAGAGTAAAGTGGCTGAGAGAAGGAGTCGCAAAACAAAGAAAAGCATTTGCTAAAGAGGCTAAAATATTTGCAAATATCAGGCACCCCAATGTTGTTGGGTTGAGAGGGTACTATTGGGGTCCTACACAGCACGAGAAGCTTATTATTACAGATTACATCTCTCCAGGAAGTCTTGCAAGTTTTCTACATGATCGACACGGAAGAAAAGGTCCACCATTGACTTGGGCACAGAGGCTCAAAGTAGCTGTTGATGTAGCCCGTGGCCTGAACTATCTCCATTTTGGTCGTGCTGTTCCCCATGGCAACCTCAAAGCAACAAATGTGTTGTTAGATACAGCTGACCTGCATGCACGTGTAGCTGATTACTGCCTCCACAGAATTATGACTGAGGCTGGTGTTATTGAGCAGATTCTTGATGCCGGGTTCTTGGGTTATTGTGCACCAGAGTTGGCTGCTTCCAAGAAGCCCTTGCCCTCCTTCAAGACAGATGTTTACACCTTTGGAGTGATTCTTTTGGAACTTCTAACTGGAAGGTGTCCTGGAGATGTTATATCTGGTGAGGAGGAAGGTGTTGATCTACCAACCTGGGTGCGGTTGCATGCAGCCAAAGGTAGAGTGTCGGAATGTTTTGATGCTGCATTGATGGGAGAAATGGCTAGTCCAAATGTAGAAAAGGGCATTAATGAGGTCCTTGGAATATCTATGTGTTGCCTAACATCTGTTTCTGAGAGACCAGATATAAAGTCTGTGTATGAAGATCTTTCTTCTATGTAG 3120 0.4051 MGQLPSKDILALLEFKKGIKHDPTGYVLNSWNEESINFDGCPSSWNGVLCNDSDIVGIVLDNLGLSANANLSVFSILKKLVKLSMSNNSISGKLPDKIDDLKSLEILDLSNNLFSSSLPSGIGTLAGLRNLSLAGNNFSGQIPDSISGMASMQALDLSRNSFSGTLPPSLTKLTSLVLLNLSHNGFTGKIPKGFGLIYSLEKIDLHGNKLDGDLDTEFIYFTSASYVDFSDNMLVSSKSQQQKFLAQISESIEHLNLSHNKLTGSLVRGSEQPVFEGLKMLDLSYNQLSGELPGFDFVYELLVLKLSNNRFSGFIPTGLLKGDSSVLTELDLSGNNLSGEMSIITSTTLHFLNLSSNGISGELPLLTGNCEVLDLSNNKLEGNLSRMMKWGDIKYLDLSRNHLTGPLPQVTPQFLQLNYLNLSHNSLSSLLPRVFTKYPKLKVLDVSSNHLYGVFLADLLAVPTLHELHLEDNMLSGGLNLSSISKVQSDLQILELSHNKLNGHFPDDFGSLIGLKVLNIAANNFSGSVPTTIADMKSLDTLDISENLFTGPLPINMPKGLKYFNASNNDLSGVVPEDLKKFPDYSFYPGNAGLHFPNDPSGLINKPDESSNRKPISTIVIVSSLVALVLLLLLAVFIYYKRVSRSRRGYVGKDISEHAQSHVAGLGRPKDLGGVSVVSVKDHVLPLTEKSAKMDENMASVSGLSPSKHIHFSSPGSSDSSTAENIARLYARSPDKLIGELHFLDDTITLTPEELSRAPADVLGRSIHGTSYKATLVNGLLLRVKWLREGVAKQRKAFAKEAKIFANIRHPNVVGLRGYYWGPTQHEKLIITDYISPGSLASFLHDRHGRKGPPLTWAQRLKVAVDVARGLNYLHFGRAVPHGNLKATNVLLDTADLHARVADYCLHRIMTEAGVIEQILDAGFLGYCAPELAASKKPLPSFKTDVYTFGVILLELLTGRCPGDVISGEEEGVDLPTWVRLHAAKGRVSECFDAALMGEMASPNVEKGINEVLGISMCCLTSVSERPDIKSVYEDLSSM 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61045g00001 1039 Pfam Leucine rich repeat 394 451 IPR001611 GO:0005515
Stsc61045g00001 1039 Pfam Leucine rich repeat 491 548 IPR001611 GO:0005515
Stsc61045g00001 1039 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515
Stsc61045g00001 1039 FunFam Leucine-rich repeat receptor-like protein kinase 742 834 - -
Stsc61045g00001 1039 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 4 249 - -
Stsc61045g00001 1039 Gene3D Ribonuclease Inhibitor 171 240 IPR032675 -
Stsc61045g00001 1039 Gene3D Phosphorylase Kinase; domain 1 748 834 - -
Stsc61045g00001 1039 PANTHER OS07G0626500 PROTEIN 2 1038 - -
Stsc61045g00001 1039 SMART LRR_typ_2 101 125 IPR003591 -
Stsc61045g00001 1039 SMART LRR_typ_2 77 100 IPR003591 -
Stsc61045g00001 1039 SMART LRR_typ_2 414 437 IPR003591 -
Stsc61045g00001 1039 SMART LRR_typ_2 173 196 IPR003591 -
Stsc61045g00001 1039 SMART LRR_typ_2 298 322 IPR003591 -
Stsc61045g00001 1039 Pfam Leucine Rich repeat 325 340 IPR001611 GO:0005515
Stsc61045g00001 1039 Pfam Leucine Rich repeat 346 362 IPR001611 GO:0005515
Stsc61045g00001 1039 Pfam Leucine rich repeat N-terminal domain 6 51 IPR013210 -
Stsc61045g00001 1039 SUPERFAMILY L domain-like 251 384 - -
Stsc61045g00001 1039 Gene3D Transferase(Phosphotransferase) domain 1 835 1039 - -
Stsc61045g00001 1039 Pfam Protein tyrosine and serine/threonine kinase 763 1034 IPR001245 GO:0004672|GO:0006468
Stsc61045g00001 1039 Gene3D Ribonuclease Inhibitor 241 601 IPR032675 -
Stsc61045g00001 1039 ProSiteProfiles Leucine-rich repeat profile. 416 437 IPR001611 GO:0005515
Stsc61045g00001 1039 ProSiteProfiles Protein kinase domain profile. 757 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61045g00001 1039 FunFam Pollen receptor-like kinase 1 835 1039 - -
Stsc61045g00001 1039 SUPERFAMILY RNI-like 82 568 - -
Stsc61045g00001 1039 Gene3D Ribonuclease Inhibitor 6 169 IPR032675 -
Stsc61045g00001 1039 SUPERFAMILY Protein kinase-like (PK-like) 761 1036 IPR011009 -
Stsc61045g00001 1039 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 342 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61045g00001 Stsc-Chr61045 2595 5976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61045g00001 140 594 Receptor kinase-like Gene Family AT5G07280 30.323 4.81e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc61045g00001 PK_Tyr_Ser-Thr 3.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61045g00001 - - gmx:100793639 1463.74