Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61044g00001 ATGATGAACAAGAGTTTGATATTCCAACAACAAAATCATCAGCATCAGCAACAACAAGTCGTGGTAGTGGAAGAAAACATGTCTAATTTGACTTCAGCTTCAAACGAAGGTAACAGTGTTTCGAATTCTTCAGGTACCTTCATCACTCCACCAACAACAACAACATCAGACACTTCAATTCAGCCACCATCAAAGAAAAAGAGAAACCTTCCGGGGAACCCAGACCCAGATGCTGAGGTGATAGCTTTATCTCCAAAATCGCTGTTAGCAACAAACAGATTCATGTGTGAGATCTGCAATAAAGGGTTTCAGAGAGACCAAAACCTACAACTCCACAGAAGAGGACACAACCTACCATGGAAGCTGAAGCAAAGATCAAGCAAAGAGATAAGAAAGAAAGTGTACGTGTGTCCTGAACCCAGTTGCGTCCACCACGACCCGTCACGGGCCTTGGGGGACTTAACTGGGATCAAGAAACACTTCTGTAGGAAGCATGGAGAGAAGAAGTGGAAGTGTGAGAAGTGTTCAAAGAAGTATGCGGTTCAGTCTGATTGGAAAGCACATTCCAAGACCTGTGGGACTAGAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGAGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCACTTGCACAAGAGACAGCAAGAACCACCACCAACACTTCTACAACAACAATAATACCCCAACTTCAATTCAATAATCCCCAAATTTTCCCATTGAAGAAAGAGCCATTGCAGTTACAAAGTTTCAACCTTGTTAGGACAGAATTACCCCCATGGCTTGGCAGTAGTAATACTCCAAACCCATCTCAAAATAATCATCAAGGTCAAGACTTTCTGAATCTCCATGAAAATGAGAACCCAAATCCAAACCCTAACCCTAGTAGGCTAGTAGGGCTAGGGGTAGGTGGTCCCACAGTTGAAGGGTACCAGCCTTGTGCAGCTTCATCAGCTCACATGTCAGCAACAGCTTTGCTGCAAAAAGCAGCTCAGATGGGTGCAACCATGAGCAGCAGCACCAACAGCATTGGGCCCCACCATCAAAGTCACGTGTCTGTTAATCCTTCTGAAACCCTTAATCACTTTCCTTTGAATTTGTCCTCACGTGATCACCACCACCACCATAACCATATCACTACCACCACCACCAATACAACAACAACTGCTGCTCCTTCTTCTTCCTCTTCTTATGATGTTATGATGATGAATTCTTTCTCTTCTGGATTTGAAGCGGCACAGTTTGATGACCCTTTTGGTGGAATTCTTGTTAGTAATAATAATAATAATAATAATACAAAGAAAGATGATGATGATCATGGTGGTCATGATAATGATAATAATGGTGACAATAATAGCTTCTTGTTGCATGATACCCTTCCAAAGGCAACAAGCACCACCGCCGCCAACGGTGGTCGCGGCGGTGGCGGTGGAAAAGAAGAGTTGACGAGGGATTTCTTGGGTCTAAGGCCACTTTCCCATAGTGACATTCTTAGCATTGCTGCAATGGGAAACTGTATGAATAATGATCAACAAAACCAAGCTCAAAAGCACTGGTAA 1590 0.4346 MMNKSLIFQQQNHQHQQQQVVVVEENMSNLTSASNEGNSVSNSSGTFITPPTTTTSDTSIQPPSKKKRNLPGNPDPDAEVIALSPKSLLATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKEIRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARTTTNTSTTTIIPQLQFNNPQIFPLKKEPLQLQSFNLVRTELPPWLGSSNTPNPSQNNHQGQDFLNLHENENPNPNPNPSRLVGLGVGGPTVEGYQPCAASSAHMSATALLQKAAQMGATMSSSTNSIGPHHQSHVSVNPSETLNHFPLNLSSRDHHHHHNHITTTTTNTTTTAAPSSSSSYDVMMMNSFSSGFEAAQFDDPFGGILVSNNNNNNNTKKDDDDHGGHDNDNNGDNNSFLLHDTLPKATSTTAANGGRGGGGGKEELTRDFLGLRPLSHSDILSIAAMGNCMNNDQQNQAQKHW 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61044g00001 529 MobiDBLite consensus disorder prediction 271 305 - -
Stsc61044g00001 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 519 IPR031140 -
Stsc61044g00001 529 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Stsc61044g00001 529 SMART c2h2final6 170 190 IPR013087 -
Stsc61044g00001 529 SMART c2h2final6 135 165 IPR013087 -
Stsc61044g00001 529 SMART c2h2final6 94 116 IPR013087 -
Stsc61044g00001 529 FunFam protein indeterminate-domain 12-like 73 141 - -
Stsc61044g00001 529 MobiDBLite consensus disorder prediction 347 405 - -
Stsc61044g00001 529 MobiDBLite consensus disorder prediction 390 405 - -
Stsc61044g00001 529 MobiDBLite consensus disorder prediction 433 467 - -
Stsc61044g00001 529 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
Stsc61044g00001 529 MobiDBLite consensus disorder prediction 30 78 - -
Stsc61044g00001 529 Pfam Zinc-finger double-stranded RNA-binding 94 116 IPR022755 -
Stsc61044g00001 529 MobiDBLite consensus disorder prediction 30 66 - -
Stsc61044g00001 529 Gene3D Classic Zinc Finger 75 140 - -
Stsc61044g00001 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Stsc61044g00001 529 MobiDBLite consensus disorder prediction 271 314 - -
Stsc61044g00001 529 Gene3D Classic Zinc Finger 148 228 - -
Stsc61044g00001 529 MobiDBLite consensus disorder prediction 347 376 - -
Stsc61044g00001 529 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
Stsc61044g00001 529 MobiDBLite consensus disorder prediction 442 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61044g00001 Stsc-Chr61044 9216 12632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61044g00001 65 348 IDZ Gene Family AT3G50700 57.680 1.06e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc61044g00001 zf-C2H2_jaz 6.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61044g00001 K25870 - gmx:100808344 514.998