Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61043g00003 ATGAATTCAACGGCGTCACTGGATCATTGGAGGAGTTACTTCAAGAATGCGAATTCCGACATATTCAGCATCATTGACCGCGCCATCATGGTTGCTGCTTCTGATTGCCCCATGGAGTTCAGGCTCCGCCGTGACGCCATTGCCGAGCGCCTCTTCTCCTGCAGGCTCTCGCGGTGCTGTGGATGTGACCGAATTGAGCTCGCCATCGATGGCGGCAAAGATGGTGGTGGCTGCCGCAAGAGCGGTGAGTCCGAGGTGGAGACGGGTGGGAGTAAGGAGAGCAAAGTCAACAGCAGCAGAGACGATAGGGGAGAGGTGAATGTTCAGATAGTGAGCAATTACAGTTATGGGGAAGCAGAGGCATTGACGGATGAGATTGAAGAACAATCTCAGTATGTTGATGAGGTCTTCAGGATCAGACAGGTTTTGCTTAATTCTCAACAAGAGTCTGATACAGTGTTATTTGAGTCGTTGCGAAGGCTTCAGCTGATGGATCTCACTGTGGATCTTCTGAAGGCCACTGAGATTGGAAAGGCTGTCATTCCTCTTCGAAAGCACGGCTTGAGGGATATTCGGCAACTTGCACGGACACTTATTGATGGCTGGAAAGTTATGGTGGATGAGTGGGTCAAGGCTACCACATCTATCACAGGTTCAAAAGGTACCCCAGATTCAGTAAACCCATCTGTAGTTGATGAAGAAGAAGGGCTTCCATCACCCCCCATGGATGAAGGGGCTTTCTTTGCCACTCAAGCCGGTTCAATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATTACGGAAGTGAGTTAACTTTGCCGTTTCTCATGCTTTGTCTAGCTTGCTTTTGCTTTTGCTCTTCGGTTCTTTATTTGAATTCCCCACTTCTTAAGATTGATGATTATGAATGGGAAACGATATTTCAGATCCTCAACAGAGTGGGGAATTCATCAAGAACTGTGAAAGTAGCAGAAGGGCATCACTGGACAATAAAAATATGGTAG 1005 0.4776 MNSTASLDHWRSYFKNANSDIFSIIDRAIMVAASDCPMEFRLRRDAIAERLFSCRLSRCCGCDRIELAIDGGKDGGGCRKSGESEVETGGSKESKVNSSRDDRGEVNVQIVSNYSYGEAEALTDEIEEQSQYVDEVFRIRQVLLNSQQESDTVLFESLRRLQLMDLTVDLLKATEIGKAVIPLRKHGLRDIRQLARTLIDGWKVMVDEWVKATTSITGSKGTPDSVNPSVVDEEEGLPSPPMDEGAFFATQAGSMELSQFFDGMDDYGSELTLPFLMLCLACFCFCSSVLYLNSPLLKIDDYEWETIFQILNRVGNSSRTVKVAEGHHWTIKIW 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61043g00003 334 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 268 IPR044805 -
Stsc61043g00003 334 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 124 218 IPR035441 -
Stsc61043g00003 334 SMART TFS2_5 136 208 IPR003617 GO:0005634
Stsc61043g00003 334 CDD TFIIS_I 134 207 - -
Stsc61043g00003 334 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 220 IPR035441 -
Stsc61043g00003 334 ProSiteProfiles TFIIS N-terminal domain profile. 134 209 IPR017923 -
Stsc61043g00003 334 MobiDBLite consensus disorder prediction 76 102 - -
Stsc61043g00003 334 MobiDBLite consensus disorder prediction 75 102 - -
Stsc61043g00003 334 Pfam TFIIS helical bundle-like domain 158 206 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61043g00003 Stsc-Chr61043 9256 12387 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc61043g00003 Med26 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61043g00003 - - aip:107625382 467.618