Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61042g00005 ATGGCGGCGACACCGTCGTCGAACCGTTCCCCTGACGACTTCACCGTCGATCCGACGCCTTTAATCGGAAACTCTAACGGCGGCAACGGTGGTGGAGCCACCTACGATGAATCGAACTCCGGCCGCAGATTCGTCCGGCGGCAGAGCCTCCGCCAGGCCGCGCGGTTTCTTCGCCAGGGGAGCGGGCGTAGGTCGATGCGGGAGCCGTCGATGGTGGTGAGGGAGACAGCGGCGGAGCAGCTGGAGGAGCGGCAGAGCGATTGGGCGTACTCGAAGCCGGTGGTGGTGCTCGACGTCCTCTGGAACTTCGCGTTCGTGGTGGCAGGCGCCACCGGGCTAGTCTTGAGCCGGAACGAGTCGCCGAACGCGCCGCTGAGGTTGTGGATCTTAGGGTACGCGGCTCAGTGCATTGTCCACGTGGCGTGCGTTTGCGTTGAGTATCGGAGGAGAAGGAGGAGGATGGAGCAGCAGCAGCAGCAGCTGAGCACCAACGACGTCGTTCAAGGCGTTGATGGAGTTGGTGTTGAGGGAAGTGGGGATTTGAGCTCCGGTTCCATGGAAGGTTCTGGACAGTACTTGACATTGGCGCAATTCGATGAGGACGGCACAAGCATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCCTTTATCTGGTGGGTTGTCGGGTTCTACTGGATATCAGCTACTAATCAAGACTTAACCCAAGAGGCTCCTCTTCTTTACTGGTTATGTATAGTCTTCCTGGGTTTCGATGTTTTCTTTGTCGTTTTCTGCATTGCACTGGCATGTATCATTGGTATTGCCGTTTGCTGTTGTCTTCCATGCATCATTGCACTTCTATACGCAGTTGCAGACCAGGAAGGGGCATCCAAAGAAGACATTGATCAGTTGTCGAAATTCAGATTCCAAAGGAATGAAAATAATGAGAAACTCGCTGATAATACACAAGGATCTGCTGGGGGAGTAATGATAGAATGCCGGGCTGATTCACCTATTGAACATGTTCTTTCTGACGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGAGGATGGAGTTGATCTAAGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGTGGACAAATGGCTATACATAAATGCTACTTGCCCCCTCTGCAAGTATAACATCCTGAAAAGTAGCAGAAGTGCTCAAGAGGAAGTGTAG 1203 0.527 MAATPSSNRSPDDFTVDPTPLIGNSNGGNGGGATYDESNSGRRFVRRQSLRQAARFLRQGSGRRSMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDVLWNFAFVVAGATGLVLSRNESPNAPLRLWILGYAAQCIVHVACVCVEYRRRRRRMEQQQQQLSTNDVVQGVDGVGVEGSGDLSSGSMEGSGQYLTLAQFDEDGTSMAKHLESANTMFSFIWWVVGFYWISATNQDLTQEAPLLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIDQLSKFRFQRNENNEKLADNTQGSAGGVMIECRADSPIEHVLSDEDAECCICLSAYEDGVDLRQLPCGHHFHCACVDKWLYINATCPLCKYNILKSSRSAQEEV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61042g00005 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 331 399 IPR013083 -
Stsc61042g00005 400 MobiDBLite consensus disorder prediction 1 42 - -
Stsc61042g00005 400 CDD RING-H2_RNF6-like 344 386 - -
Stsc61042g00005 400 MobiDBLite consensus disorder prediction 1 36 - -
Stsc61042g00005 400 Pfam Ring finger domain 344 386 IPR001841 -
Stsc61042g00005 400 PANTHER TARGET OF ERK KINASE MPK-1 61 391 - -
Stsc61042g00005 400 FunFam E3 ubiquitin-protein ligase At1g12760 331 396 - -
Stsc61042g00005 400 ProSiteProfiles Zinc finger RING-type profile. 345 386 IPR001841 -
Stsc61042g00005 400 Coils Coil 144 164 - -
Stsc61042g00005 400 SUPERFAMILY RING/U-box 335 391 - -
Stsc61042g00005 400 SMART ring_2 345 385 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61042g00005 Stsc-Chr61042 28337 33045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61042g00005 46 391 C3H Transcription Factor Family AT1G68070 51.289 4.34e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61042g00005 - - ahf:112722254 708.753