Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61042g00004 ATGGCATCGTCATCGTCGAACAACAGCAGCTACGACGTTCCCTGGGTTGAGAAGTACCGTCCTTCCAAGGTCTCAGACATTGTCGGCAATCCCGACGCCGTTTCCCGCCTTCAAGTCATCGCCCGGGACGGCAACATGCCCAACCTCATCCTCTCTGGTCCTCCTGGAACTGGTAAAACCACTAGCATACTAGCACTCGCTCATGAGCTTCACGGCTCCAATTCCAAGGAAGCAGTTCTCGAGCTCAACGCTTCCGACGACCGTGGAATTGACGTCGTCCGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTTACTCTCCCTCCTGGCCGCCACAAGATTGTTATTCTCGACGAAGCTGATAGTATGACTTCGGGGGCTCAGCAAGCTTTGCGGAGGACAATGGAGATATACTCGAATACTACTCGCTTCGCCCTGGCTTGCAACACTTCCTCTAAGGTTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATATTCGCGCTTGTCTGATGAGGAGATACTCGGTCGCCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGCCTTGAAGCCATCATTTTCACTGCTGACGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACATATAGTGGGTTCCAGTTTGTTAACCAACAAAATGTTTTCAAGGTTTGCGACCAGCCGCATCCATTGCATGTGAAGAATATGGTGCGTAATGTTCTCGAAGGGAATTTTGATGAGGCTTGTTTGGGCCTCAAACAGCTATATGATTTAGGATACTCCCCCACAGATATCATCACTACAATTTTCCGTATCATAAAAAATTATGATATGGCTGAGTACCTGAAATTGGAATTCATGAAGGAAACTGGATTTGCTCATATGAGAATTTGTGATGGGGTTGGTTCTTATCTTCAAATGTGTGGTCTATTGGCTAAGCTTTCTCTAGTTCGTGAAACAGCTAAAGCTTCATGA 996 0.4699 MASSSSNNSSYDVPWVEKYRPSKVSDIVGNPDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELHGSNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRYSRLSDEEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQQNVFKVCDQPHPLHVKNMVRNVLEGNFDEACLGLKQLYDLGYSPTDIITTIFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRETAKAS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61042g00004 331 SMART AAA_5 45 171 IPR003593 GO:0016887
Stsc61042g00004 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 233 IPR027417 -
Stsc61042g00004 331 Gene3D - 6 170 IPR027417 -
Stsc61042g00004 331 Gene3D - 235 327 - -
Stsc61042g00004 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Stsc61042g00004 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677|GO:0006260
Stsc61042g00004 331 CDD AAA 28 165 - -
Stsc61042g00004 331 FunFam Replication factor C subunit 4 7 170 - -
Stsc61042g00004 331 CDD HLD_clamp_RFC 170 232 - -
Stsc61042g00004 331 Pfam ATPase family associated with various cellular activities (AAA) 49 167 IPR003959 GO:0005524|GO:0016887
Stsc61042g00004 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 14 315 - -
Stsc61042g00004 331 FunFam Replication factor C subunit 4 171 234 - -
Stsc61042g00004 331 FunFam replication factor C subunit 2 235 327 - -
Stsc61042g00004 331 Gene3D - 171 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61042g00004 Stsc-Chr61042 22577 25204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61042g00004 11 330 Core DNA Replication Machinery Family AT1G63160 90.938 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61042g00004 K10755 - qsa:O6P43_034206 612.838