LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc61042g00003	ATGGGGAAGGCATCAAAGTGGTTTCGCGGTCTTTTTAGTCCCAAGAAGCAACACCAACAGCAACCGCAACCTCAACCTCCACAATCACATCAAACTCCTTCATATTCCGTAACTTCTTCTCCCAACCCAACTAAACACAAACGACGATGGACCTTCGTCAAATCATACAGAGAACACCACCACCACCAACAACAACAACACGTGGATCCTCCTTCCGCCGTCGATCCTGACAAGCACGCCATCGCTGTTGCCGCTGCCACCGCCGCAGTCGCTGAGGCTGCCGTCGCTGCAGCTCACGCTGCTGCTGCCGTCGTCAGACTTACTAGCAGCAGCGGCAGGTCCGCCAATGCCGGAAGTGTGACCACCGTTAGTCGCCAAGAATGGGCCGCCGTTAAGATTCAATCCGCCTTCCGTGGATGTTTGGCAAGGAGAGCATTACGGGCACTGAAAGGATTAGTGAAGCTTCAAGCACTTGTTAGAGGCCACATTGAAAGGAAGAGAACAACACAACAGATGAAAAAATGGCAAGCACTTTTAAGAGCACAAGCTAGAGTCTGTGCTGGCAGAATTCATATTCTCCAAACCCCAAATTCCACTTCTAAGCCATCTTCTACCTCCCACCTTCATGGGCCAGCAACACCAGAGAAGTTTGAAAGTCCAATCAGATCTAAAAGCATGAAACATGAGCACTCACCTTTATTTAAGAGAAATGGCTCCAAATCATGCCTCCAGCAGGTCCATGGTAGTAGTAGCCAAGAGAAATGTAGAAACAAATCAGAAAAAAACATAGATGATCTATCATGGAACCAAGAAAAATCATCAATCAGAACCTCTAGCACCATCAATGGTGACAAAAGCGACAAGAACCCTGATGCTGAAATTGATTCCAGAAGATCACAAGCCACGTCATCATCGAGACGTAGGAGCCTCTTTTCAGCAACCATCAACAACAAGGAATCATCATCAGTGATATCTCTTCAATCAGGCCCAAGCCCATCTTTTGAGGTCCAGTCTCAGAGCCCAATTAAGCCCAATTGGGTTGAGGATAGCCCATTCTGCACAGCTGAAAACAGCCCTCAATACCTATCAGCATCTTCCAAAGATAATGGATCCAAAAGAAGCCCATTCAGTGGGTCAAGGTCAAGGAGCTATATTTGTGACTATTCTATTTCTGATTACCCAAGTTACATGGCATGCACTGAATCTTCAAAGGCAAAAGTGAGGTCCCTTAGTGCCCCAAAACAAAGGCCTAACCAATGTGATAGGTCAAGTTCATCTAATAGGTACTCACTCAATGGATTGGGCTATCAAAGGCCCAATTATGCTTTGCAAGGAAGTTTCAGCAACAAGGCTTATCCAGGTTCTGGTCGTTTGGACAAGCTTGGAATGCCTGTGGGATATAGATTCTAA	1410	0.4652	MGKASKWFRGLFSPKKQHQQQPQPQPPQSHQTPSYSVTSSPNPTKHKRRWTFVKSYREHHHHQQQQHVDPPSAVDPDKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSSSGRSANAGSVTTVSRQEWAAVKIQSAFRGCLARRALRALKGLVKLQALVRGHIERKRTTQQMKKWQALLRAQARVCAGRIHILQTPNSTSKPSSTSHLHGPATPEKFESPIRSKSMKHEHSPLFKRNGSKSCLQQVHGSSSQEKCRNKSEKNIDDLSWNQEKSSIRTSSTINGDKSDKNPDAEIDSRRSQATSSSRRRSLFSATINNKESSSVISLQSGPSPSFEVQSQSPIKPNWVEDSPFCTAENSPQYLSASSKDNGSKRSPFSGSRSRSYICDYSISDYPSYMACTESSKAKVRSLSAPKQRPNQCDRSSSSNRYSLNGLGYQRPNYALQGSFSNKAYPGSGRLDKLGMPVGYRF	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	220	235	-	-
	Stsc61042g00003	469	ProSiteProfiles	IQ motif profile.	150	177	IPR000048	GO:0005515
	Stsc61042g00003	469	Pfam	Protein of unknown function (DUF4005)	358	432	IPR025064	-
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	194	210	-	-
	Stsc61042g00003	469	Gene3D	-	123	179	-	-
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	194	380	-	-
	Stsc61042g00003	469	ProSiteProfiles	IQ motif profile.	126	154	IPR000048	GO:0005515
	Stsc61042g00003	469	SMART	iq_5	148	169	IPR000048	GO:0005515
	Stsc61042g00003	469	SMART	iq_5	125	147	IPR000048	GO:0005515
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	1	46	-	-
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	409	431	-	-
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	253	267	-	-
	Stsc61042g00003	469	Pfam	IQ calmodulin-binding motif	128	147	IPR000048	GO:0005515
	Stsc61042g00003	469	Pfam	IQ calmodulin-binding motif	153	167	IPR000048	GO:0005515
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	237	252	-	-
	Stsc61042g00003	469	PANTHER	IQ-DOMAIN 5-RELATED	1	432	-	-
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	296	380	-	-
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	14	46	-	-
	Stsc61042g00003	469	MobiDBLite	consensus disorder prediction	268	285	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc61042g00003	Stsc-Chr61042	13898	20896	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc61042g00003	1	469	IQD Protein Family	AT4G23060	42.964	1.57e-76	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc61042g00003	-		-	ahf:112805329	695.656