Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61029g00006 ATGCCTCTCCTATTCTTTCTAATCCTCCTCTTTCTGTCACAAACACTGACACTCACAAAGTCTCTCAACCAAGAAGGCCTCTTCCTCCTGCAAGCCAAGAACCAACTACTTCCATCCTCCTCCCTCCCACTCCAAAACTGGAACCCCCGTGATTCCACGCCATGCAACTGGCCCCACGTCACCTGCCACCCCAACACCTCCCACGTCATCTCCCTCTCCCTCTCCGATCTCTCACTCTCCGGCCCCTTCCCCGACTCCCTCTGCCGCCTCCCCTCCCTCACCTCTCTCTCCCTCGACAACAACCTCCTCATCTCCCCCCTCCCCTCCACCCTCTCCCTCTGCACCTCCCTCACCCACCTTAACCTCTCCCAGAACCTCTTCACCGGACCCCTCCCTTCTTTCCTCTCCTCCCTCCCCTCCCTCCTCCACCTCGACCTCTCCTTCAACAACTTCTCCTCTTCCATTCCACCATCCTTCTCTCTCTTCCCCAACCTCCGTTCCCTCGACCTCTCCGCTAACCTCCTCAACGGAACCATCCCTTCTTTTCTCGCCAACCTCACCACCTTAACCTCCCTCCACTTATCCTACAACCCTTTCCTCCCTTCTTCCATACCCGCTGAGCTCTCCAACATCACCAACCTCCAAGATTTATCTCTTTCCGGCTGCTTCCTCATCGGTCCAATTCCACCATCATTAGGGAAGCTCTCCAACCTTCGAAACCTTGAACTAACCTACAACAACCTCCATGGCCCTATACCGGACTCTTTCATCTCCGGCCTCACCAGCATCGTCTTTCTCGAGCTCTATGGAAACTCCCTCTCTGGTCCATTGCCACGTGGCGATATCTGGAACAACCTCACTCACTTGGAAGGCTTCGATGCTTCGGGGAACGCCCTGACAGGGACGATTCCCTCCGAGTTAACACGCTTGAAGAAACTCGGTTCCCTCAACTTGTTCGATAACAACCTCGAAGGCTCTCTGCCGGAGAATATCGTCGAGGCGGAGAGCTTGTACGAGCTCAAACTCTTCAACAACTCGCTCAACGGGTCCTTGCCGAGTCAACTCGGGAGCAACTCCCCCCTGCAGACACTCGATCTCTCGTACAACAACTTTTCCGGCGATATTCCGGCGGGTTTGTGCAGCCGGGGAGCGTTGGAGGACATCATGCTGATTTCGAATTCGTTCTCCGGGAGAATCCCCGATGGTCTCGGTGATTGCAGGAGCTTGATGAGGGTTCGAATAAGGAACAATAACATTTCGGGAACTGTTCCAGATGCTTTGTGGGGACTGCCACACCTTTATCTTCTGGAGCTTGATGAGAATTCCCTTTCTGGGTCGATTTCTACTTCTATTTCTGGCGCAACCAACATGTCAAGTTTGTCGCTTTCCTTCAACAAATTCTCAGGGTCTGTTCCTGAGGAAATTGGGAATTTGGGCAACCTTGTTCAGTTTGTCGCCAGCCATAATAGTCTATCTGGTCGGATTCCAACGAGTGTTGTGAAATTGAGTCAGTTGGGGAAACTTGTGATCAGTGATAATGAGCTTTCGGGTGAGATTCCTTTGGGGATTGGTGCTTTGGAGAAGCTTAATGATCTTGATTTGTCCAATAATAAGCTTAATGGTAACATTCCAGGTGAATTAGGAACCTTGCCGGTGCTTAATTATCTTGATCTTTCAGGGAATCTTTTCTCTGGCAGGATCCCAACTGAGCTGCAGAATTTAAAGATTAATATGCTGAATTTGTCGAATAATCAGCTTTCAGGGGAGATCCCTGAAGAATTTGACAATGAGAATTACAAGAATAGTTTTCTAGGAAATCCAGGGCTGTGTGGTTCTTTTGAACTCTGTCAAAATTTAGGTGAGAACAAGAAGAACAAGATAAAGTATGATTGGGTTTTCAGGTTGATATTTGTGATTGCTGGAATTGTGTTTGTTGTTGGGGTAACATGGTTTTGGCTCAAATTTAGGAGCATTAAGAAGATGAAGAAGAAAGTAATGCCTAACATGTTAAAATGGAGATCCTTCCACAAACTTGGATTCAGTGAGTGTGAGATTGTGAAGTTGCTGCATGAAGACAATGTAATAGGTAGCGGAGCATCCGGGAAAGTTTACAAGGTTGTTCTGAGCAATGGTGAAGCTGTGGCAGTGAAGAAACTATGGGGATCAAAAAATAAGAATGCTGTTTCTGAAAAAGATGGTTTTTTTGAAGCTGAGGTGGAGACATTGGGAAAAATCAGGCACAAGAATATTGTGAGGCTATGGTGTTGCTGCAACAGTGGTGATAGCAAGCTCTTAGTTTATGAGTACATGCCTAATGGGAGCCTTGCTGATTTGCTTCACAGTAGCAAGAGAAGCTTGTTGGATTGGCCAATTAGGTACAGAATTGCCATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCACTATTGTGTCCCCCCTATTGTTCATAGGGATGTCAAATCCCACAATATATTGCTTGATGAAGAGTTTGGAGCAAAAGTTGCAGATTTTGGTGTGGCCAAAACTGTTAGGAGGGTTAGCCAAGGTGCAGAATCTATGTCTGCAGTTGCCGGATCTTATGGTTACATAGCACCAGAATATGCTTACACTCTAAGAGTGAATGAGAAGAGTGACATCTATAGTTTTGGAGTGGTAATTTTGGAATTGGTAAGTGGAAGAGCCCCACTTGATCCAGCATATGGTGAGAAAGATTTGGTGAAATGGGTTTCATCTACATTGGAGCAGAGTGGAGAAGATGAAGTGATAGATCCAACTATGGATGTTAAGTACAAGGGAGAAATCATTAAGGTGCTTAGCATAGGGCTTCTTTGCACAAACCCTCTTCCTATAAACCGGCCTTCAATGCGAAAGGTGGTGAAAATGCTGCATGAAGTTTCTGAAATCCCCAGAACAAAGAGTGGAAAATTGTCCCCTTACTATCAAGAAGAGGCCTCTGATAATGAAAATCATCATGGAAACATGGTTTGA 2988 0.4692 MPLLFFLILLFLSQTLTLTKSLNQEGLFLLQAKNQLLPSSSLPLQNWNPRDSTPCNWPHVTCHPNTSHVISLSLSDLSLSGPFPDSLCRLPSLTSLSLDNNLLISPLPSTLSLCTSLTHLNLSQNLFTGPLPSFLSSLPSLLHLDLSFNNFSSSIPPSFSLFPNLRSLDLSANLLNGTIPSFLANLTTLTSLHLSYNPFLPSSIPAELSNITNLQDLSLSGCFLIGPIPPSLGKLSNLRNLELTYNNLHGPIPDSFISGLTSIVFLELYGNSLSGPLPRGDIWNNLTHLEGFDASGNALTGTIPSELTRLKKLGSLNLFDNNLEGSLPENIVEAESLYELKLFNNSLNGSLPSQLGSNSPLQTLDLSYNNFSGDIPAGLCSRGALEDIMLISNSFSGRIPDGLGDCRSLMRVRIRNNNISGTVPDALWGLPHLYLLELDENSLSGSISTSISGATNMSSLSLSFNKFSGSVPEEIGNLGNLVQFVASHNSLSGRIPTSVVKLSQLGKLVISDNELSGEIPLGIGALEKLNDLDLSNNKLNGNIPGELGTLPVLNYLDLSGNLFSGRIPTELQNLKINMLNLSNNQLSGEIPEEFDNENYKNSFLGNPGLCGSFELCQNLGENKKNKIKYDWVFRLIFVIAGIVFVVGVTWFWLKFRSIKKMKKKVMPNMLKWRSFHKLGFSECEIVKLLHEDNVIGSGASGKVYKVVLSNGEAVAVKKLWGSKNKNAVSEKDGFFEAEVETLGKIRHKNIVRLWCCCNSGDSKLLVYEYMPNGSLADLLHSSKRSLLDWPIRYRIAIDAAEGLSYLHHYCVPPIVHRDVKSHNILLDEEFGAKVADFGVAKTVRRVSQGAESMSAVAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVSGRAPLDPAYGEKDLVKWVSSTLEQSGEDEVIDPTMDVKYKGEIIKVLSIGLLCTNPLPINRPSMRKVVKMLHEVSEIPRTKSGKLSPYYQEEASDNENHHGNMV 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61029g00006 995 SUPERFAMILY RNI-like 71 441 - -
Stsc61029g00006 995 Gene3D Ribonuclease Inhibitor 283 628 IPR032675 -
Stsc61029g00006 995 PRINTS Leucine-rich repeat signature 165 178 - -
Stsc61029g00006 995 PRINTS Leucine-rich repeat signature 526 539 - -
Stsc61029g00006 995 Gene3D Transferase(Phosphotransferase) domain 1 770 981 - -
Stsc61029g00006 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Stsc61029g00006 995 Gene3D Ribonuclease Inhibitor 22 178 IPR032675 -
Stsc61029g00006 995 Gene3D Ribonuclease Inhibitor 179 282 IPR032675 -
Stsc61029g00006 995 Pfam Protein kinase domain 690 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61029g00006 995 SUPERFAMILY Protein kinase-like (PK-like) 687 962 IPR011009 -
Stsc61029g00006 995 SMART serkin_6 689 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61029g00006 995 SUPERFAMILY L domain-like 386 596 - -
Stsc61029g00006 995 FunFam Leucine-rich repeat receptor-like protein kinase 770 977 - -
Stsc61029g00006 995 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Stsc61029g00006 995 FunFam Receptor-like protein kinase HSL1 312 618 - -
Stsc61029g00006 995 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Stsc61029g00006 995 FunFam Receptor-like protein kinase HSL1 672 769 - -
Stsc61029g00006 995 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Stsc61029g00006 995 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 181 277 - -
Stsc61029g00006 995 FunFam Leucine-rich repeat receptor-like protein kinase 22 180 - -
Stsc61029g00006 995 MobiDBLite consensus disorder prediction 973 995 - -
Stsc61029g00006 995 Gene3D Phosphorylase Kinase; domain 1 673 769 - -
Stsc61029g00006 995 SMART LRR_typ_2 310 334 IPR003591 -
Stsc61029g00006 995 SMART LRR_typ_2 235 259 IPR003591 -
Stsc61029g00006 995 SMART LRR_typ_2 138 161 IPR003591 -
Stsc61029g00006 995 SMART LRR_typ_2 526 550 IPR003591 -
Stsc61029g00006 995 SMART LRR_typ_2 162 185 IPR003591 -
Stsc61029g00006 995 SMART LRR_typ_2 186 211 IPR003591 -
Stsc61029g00006 995 SMART LRR_typ_2 90 114 IPR003591 -
Stsc61029g00006 995 SMART LRR_typ_2 571 596 IPR003591 -
Stsc61029g00006 995 ProSiteProfiles Protein kinase domain profile. 689 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61029g00006 995 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 165 962 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61029g00006 Stsc-Chr61029 21800 25245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61029g00006 21 987 Receptor kinase-like Gene Family AT1G28440 56.781 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc61029g00006 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61029g00006 - - aip:107613214 1594.33