Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61029g00003 ATGACTCAGTGCAACAATAACAATTACCCAGAAAACAATCACAGCACCATTGTGGAGAGAGACAAAGATACCTTAATTAGTAGAACTTGTCCATCATGCGGTCATCATATCAAATACCAACAAGAACACCAGGGTGCTGGAATTCACGATTTACCTGGGCTACCAGCTGGAGTGAAGTTTGATCCAACAGATCAGGAGATTCTAGAACATTTGGAAGCCAAGGTGAGGTCTGATATTCACAAGCTTCACCCCTTAATTGATGAGTTCATCCCTACTCTTGAAGACGAGAATGGAATCTGCTGCACTCATCCAGAAAAGTTGCCAGGAGTAGGCAAAGATGGGTTGATCCGTCACTTCTTTCACCGGCCATCGAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGCTGATGGCAGTGAAACAAGGTGGCACAAAACAGGTAAAACTAGACCAGTCTACATCAGTGGCAAGTTGAAAGGCTACAAGAAAATCCTTGTTCTTTACACCAACTACAAGAAGCAAAGGAAGCCTGAGAAAACAAACTGGGTCATGCACCAGTACCACCTTGGCAACAATGAAGAGGAGAAAGAAGGTGAGTTAGTTGTGTCTAAGGTTTTCTACCAGACACAACCTAGACAATGTGCTGGTTCACTACTCATCAAAGATTCATCCTTCCCTGCTAAACTAAAGGATCATCAAGGCTCTGTTCATCATCATCATGAAGTTACTAATAATCATAAGAATAATGGGTTTGTGGACTACTACAATGCATCTTTCATAAGCTTTGATCAAGGGGAACAACAACAACAACATAGGTCTAGCAATGCCACATTGATTTCCCATTTTCCTGTTCATGATGCTGCTCCTTTCATTCCTTGA 894 0.4195 MTQCNNNNYPENNHSTIVERDKDTLISRTCPSCGHHIKYQQEHQGAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEDENGICCTHPEKLPGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYKKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCAGSLLIKDSSFPAKLKDHQGSVHHHHEVTNNHKNNGFVDYYNASFISFDQGEQQQQHRSSNATLISHFPVHDAAPFIP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61029g00003 297 Pfam No apical meristem (NAM) protein 55 194 IPR003441 GO:0003677|GO:0006355
Stsc61029g00003 297 Gene3D NAC domain 63 217 IPR036093 GO:0003677|GO:0006355
Stsc61029g00003 297 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 18 252 IPR044799 GO:0003700
Stsc61029g00003 297 SUPERFAMILY NAC domain 49 213 IPR036093 GO:0003677|GO:0006355
Stsc61029g00003 297 ProSiteProfiles NAC domain profile. 54 213 IPR003441 GO:0003677|GO:0006355
Stsc61029g00003 297 FunFam NAC domain-containing protein 73 63 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61029g00003 Stsc-Chr61029 6831 9288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61029g00003 28 297 NAC Transcription Factor Family AT4G28500 63.406 9.90e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc61029g00003 NAM 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61029g00003 - - gmx:100791648 481.1