Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61029g00001 ATGGATGATGGAGAAGTTGTTTCAAATGGTGGTTTATTCCCTCATCATCAGAACAGCCAAACTGATTCACCTTCTAACAATCCCACTCCAGCTTTGAAAAGGAAGAGAAACCTACCTGGAAACCCAGATCCTGAAGCAGAAGTGATAGCCTTATCACCCAAGACTCTGATGGCGACAAACAGGTTCGTGTGCGAGATTTGCCTAAAGGGCTTTCAAAGGGATCAGAATCTGCAACTGCACAGAAGAGGACACAACCTTCCATGGAAGCTGAAGCAGAGAACAACAAAAGAAGTAAGGAAGAGAGTGTACGTGTGCCCGGAGAAAAGCTGCGTGCATAACCACCCATCAAGGGCGTTAGGGGACTTAACAGGGATCAAGAAGCACTTTTGTAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCAAAGCGTTATGCTGTTCAGTCAGATTGGAAAGCACACTCCAAAACCTGTGGTACCAGAGAATACAAATGTGACTGTGGAACCATCTTTTCACGGAGGGACAGCTTCATCACACACAGGGCTTTTTGTGATGCTTTAGCAGAAGAAACAGCGAGGGTAAATGCAGCATCAACCATAAGCCACACATTATTAGGTGCTAACAACATTGCTTACACCCTCATGCAGCAGCAGCACCACCAAAATCATCCCTTGCTTCCTAATAACATGTCAACCCATTTCTCTTCAATTTTCAAGCCAATTTCATCATCATCCCCCACTGATGAAATAACCACCAATAATAGTAACCAAACATCTTCTAGACCCTTATCCCTTTGGAACATGACTCACCCTGTTCATGACACAGCAACAATAATGCCAATTACTCATCATCATAACAATTTGCATGATATTCATCATCAAATTGGATTTGCTACAAACCCTCCTCCACCATCTAATAACAATGCTTACCAACTAAATTGGGTGTTTGGGAACAAACTCTCCTCCAATGGAAGTAGCCACCAAGAGATAATAAGTAGCACTACAAGTGCTAATTCACTTCCATTAATGAACATTGTTAAGAATAACAACAATAATAATAATCATGTTGCAAACCAGCTTGTAAGTGTTCCTTCCTTGTATAGCAGCCAACACCAATCCCATGATCAAATAACAGCAACAACAACATCTTCAGCAGCAGCAAACATGTCTGCCACAGCTTTATTGCAGAAAGCTGCTCAAATTGGATCAACTTCTTCAACTGATCCATCATCATTTCTTGGGAGCTTAGGTTTGAAATGCAGTAACAACAGTAACCAAGGGCAAGATGGGAATAACAACAAATTTTGCGGGATTTACAGTTCAAGTTGGAGTGAGCCAGAGAGCTCTACTGGTGATTTGACACAAATGCCCCCTACAAAAAGAATGCGCGTGCAGAATGAAGATGCAGGGGGACAAACTCGGGATTTTCTTGGTGTTGGCGTGCAAACCATTTGCCACCCTTCTTCTATCACTGGCTGGATTTGA 1491 0.4279 MDDGEVVSNGGLFPHHQNSQTDSPSNNPTPALKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTTKEVRKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASTISHTLLGANNIAYTLMQQQHHQNHPLLPNNMSTHFSSIFKPISSSSPTDEITTNNSNQTSSRPLSLWNMTHPVHDTATIMPITHHHNNLHDIHHQIGFATNPPPPSNNNAYQLNWVFGNKLSSNGSSHQEIISSTTSANSLPLMNIVKNNNNNNNHVANQLVSVPSLYSSQHQSHDQITATTTSSAAANMSATALLQKAAQIGSTSSTDPSSFLGSLGLKCSNNSNQGQDGNNNKFCGIYSSSWSEPESSTGDLTQMPPTKRMRVQNEDAGGQTRDFLGVGVQTICHPSSITGWI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61029g00001 496 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Stsc61029g00001 496 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Stsc61029g00001 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 484 IPR031140 -
Stsc61029g00001 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Stsc61029g00001 496 FunFam protein indeterminate-domain 12-like 41 109 - -
Stsc61029g00001 496 MobiDBLite consensus disorder prediction 12 32 - -
Stsc61029g00001 496 Gene3D Classic Zinc Finger 95 186 - -
Stsc61029g00001 496 MobiDBLite consensus disorder prediction 245 266 - -
Stsc61029g00001 496 MobiDBLite consensus disorder prediction 1 46 - -
Stsc61029g00001 496 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61029g00001 Stsc-Chr61029 52 3373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61029g00001 27 496 IDZ Gene Family AT1G03840 53.125 4.36e-148 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc61029g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61029g00001 K25870 - gmx:100778666 559.681