Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61027g00005 ATGGTGAAGGGAAAGATTGAGATGAAGAGAATAGAGAATGAATGTAACCGAAAAGCCACGTTTTCAAAGCGAAGAAATGGTCTTTTAAAGAAAGCTCATGAATTATCTGTTCTGTGTGATGCACAAGTTGGTGTCATAATATTTTCCCAAAACGGAAATTTATTTGAGTTCTCATCAACTTCTTCTCACATTTCAAAGATACTGGAACGCTACTATGAATATACCGGAGAGTTTCCACCCAACAAGTTTGGAGAAGAATATATCCAGCAACTCAAGTTTGACTCTGCATCCATGGAAGAAAAAATTGAGATTCTTGAACTTTCTAGAAGGAAGATGCTGGGGCATTGCTTGAGTTCTTGTTCTTTTGATGAACTCCAACAAGTGGAGAACAAGCTCCGCACAAGTTTGCAATGCATCCGTCTCAGAAAGACTCAACTATTTAAGGAGCAAATTGAACAACTACAGAGCAAGGAAAGAAACTTGCTCAATGAAAATGTCCGATTAAGTGCAATGTGCACGGAAAAACCATGGCAGCAGAGAGAAGAGGAAGCAACAGAAACAAGTCACAGTTTTGATGTGGAGACTGATCTTTTTATTGGACTTCCAAAAGGATCATTCTGA 621 0.3865 MVKGKIEMKRIENECNRKATFSKRRNGLLKKAHELSVLCDAQVGVIIFSQNGNLFEFSSTSSHISKILERYYEYTGEFPPNKFGEEYIQQLKFDSASMEEKIEILELSRRKMLGHCLSSCSFDELQQVENKLRTSLQCIRLRKTQLFKEQIEQLQSKERNLLNENVRLSAMCTEKPWQQREEEATETSHSFDVETDLFIGLPKGSF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61027g00005 206 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Stsc61027g00005 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc61027g00005 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 171 - -
Stsc61027g00005 206 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Stsc61027g00005 206 Coils Coil 144 171 - -
Stsc61027g00005 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc61027g00005 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc61027g00005 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc61027g00005 206 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Stsc61027g00005 206 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Stsc61027g00005 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc61027g00005 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc61027g00005 206 Pfam K-box region 89 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc61027g00005 206 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61027g00005 Stsc-Chr61027 21300 26870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61027g00005 1 203 MADS-box Gene Family AT5G51860 48.293 1.55e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc61027g00005 K-box 8e-22 No_clan