Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61027g00002 ATGAATGCGGAAATAAATAGAACCCAACCGAGGCTGAGGGACCCTCACTTCCATTCGGATAAGTGGGGCTCTCATCATCCATTGCTATTTGCTAGGTGCAGAAAGCTTCAAACCGCAGTCAACGTATCAAAAACTATTCTTCTTCCTCTGTTTTGTTCCTCCAACCCAAAAAGAAAAAAAGAAGAGATGGAAGCGAATCATGGCGGTTTCAGCAAAGACGCCGACGTATCAACATCTAAGTCGACGCCAATAGCGAACACGCCTGAACCGACGTTCCCGGAACCGGTGCCGCCGTCTCCAGAAGCGGCGCCTATGAAAGAGGAGCTCGCGGACTGCGAGAAGAGCCTCGAGGAGCGTCTCCAGGTGGCGATTGTTCCCACGCCGGTGGCAAGGAGGCCGTCGAAGGACCGCCACACGAAGGTAGAGGGGCGCGGCCGGAGAATCCGGATGCCGGCTACGTGCGCCGCCAGGATCTTCCAGCTGACACGGGAGCTAGGCCACAAGTCCGACGGGGAAACAATACGGTGGCTGCTGGAGCAGGCTGAGCCGGCGATCATCGAGGCCACCGGCACAGGAACCGTCCCGGCGATCGCGGTTTCTGTCGGCGGGACACTCAAGATCCCAACGACGTCGCCGGCGAATCCACAGGGCGAAGAAGAGGCGTCAAGAAAACGAAGAAGAAGGGCATCGAACAGCGAGTTCATTGATGTGAACGAGGAGCAACAATCGTCATCAGTGTCTTCGGGTCTCGCACCAATCACACAAACCGCTGCATACGGTGCTAGTTCTGGTGTTGGTGGTGGAATCGTTCCAATGTGGACTATTGGTGGCGGTGGCGGTGGTTCTAATGGTCCTTTTTTCATGTTCCCAAATGCTCCTTCTTCCGGGGATGGTGTTGTGAACCATCCTCAGTATTGGGCTATTCCAGCGAATGCGACGCCGTTTTTTAACGTTCAAGCTCGGCCTATTTCCGGGTTTGTTGCGGCTGAGCAATTTGGCCATGTGGTGGTGCAGCCGCAGCCGCCAAGTTGTTGTTCTTCTAATGGTTCTGCTAACTCTTTTTCTACTCTGGCTCCTACTTTGAGCTCTGGAACCAGTGCCATTAATGGCTCTACTGTTAGTGTTACTACTACTACTTGTAGTTCTAGTGCTGCCGCCAACACTCAAATGCTTAGGGATTTCTCTTTGCAGATTTATGACAAGAAAGAGTTGCAATTCTTGGGTTCTTCTTCTTCTTCTTCTGGTGCCGTTGCTGCAGCTAAGTCGGAACAACAACCACCTCAGACTCAGAGTTCTAAGCCTTCGAATTGA 1311 0.5286 MNAEINRTQPRLRDPHFHSDKWGSHHPLLFARCRKLQTAVNVSKTILLPLFCSSNPKRKKEEMEANHGGFSKDADVSTSKSTPIANTPEPTFPEPVPPSPEAAPMKEELADCEKSLEERLQVAIVPTPVARRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPAIIEATGTGTVPAIAVSVGGTLKIPTTSPANPQGEEEASRKRRRRASNSEFIDVNEEQQSSSVSSGLAPITQTAAYGASSGVGGGIVPMWTIGGGGGGSNGPFFMFPNAPSSGDGVVNHPQYWAIPANATPFFNVQARPISGFVAAEQFGHVVVQPQPPSCCSSNGSANSFSTLAPTLSSGTSAINGSTVSVTTTTCSSSAAANTQMLRDFSLQIYDKKELQFLGSSSSSSGAVAAAKSEQQPPQTQSSKPSN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61027g00002 436 MobiDBLite consensus disorder prediction 415 436 - -
Stsc61027g00002 436 MobiDBLite consensus disorder prediction 218 234 - -
Stsc61027g00002 436 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 104 403 IPR005333 GO:0003700
Stsc61027g00002 436 MobiDBLite consensus disorder prediction 205 249 - -
Stsc61027g00002 436 ProSiteProfiles TCP domain profile. 134 188 IPR017887 -
Stsc61027g00002 436 MobiDBLite consensus disorder prediction 62 109 - -
Stsc61027g00002 436 MobiDBLite consensus disorder prediction 72 87 - -
Stsc61027g00002 436 MobiDBLite consensus disorder prediction 235 249 - -
Stsc61027g00002 436 MobiDBLite consensus disorder prediction 88 102 - -
Stsc61027g00002 436 Pfam TCP family transcription factor 134 238 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61027g00002 Stsc-Chr61027 10170 12148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61027g00002 128 407 TCP Transcription Factor Family AT5G51910 49.653 2.78e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc61027g00002 TCP 8.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61027g00002 - - ahf:112711692 526.168