Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61026g00004 ATGGGGAAGAAAAAGAGGCAAGTAGGAGAAACAAGTGAAGATGGTGGAAATCAAAGCCGAGTGGTGGTGGGAGATAGCAGTAGTATCGAATATGAGAGTGATTATGCGTCGTCGTCGTCTATGGATGTGTATCAGGAGTTGAAGGATGAGGGGAACAAGCTGTTCCAAAGGAGGGACCCTAGAGGGGCTTTGCTGAAATATGAGCAAGCTATCAAATTGTTACCAAGGAATCATGCAGATGTGTCATATCTGAGGAGTAACATGGCTGCATGCTACATGCAGATGGGGCGAAGCCAGTACCCGAGGGCGATTCGTGAATGCGATTTGGCTCTTGAGGTAACACCAAAATACAGCAAGGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTCAAGGATGTTAGTGCTGTTGTGGAGACAGATCCAAATAATGCCACAGCCTTGGAGATCTCAGAAAAGGTGAAAATTGCACTTGAGATGAAAGGCTTAATAGTAAATGGTTCGATAATTGAATTGCCTCCAGACTATGTTGAACCCCCTAGTGCTTTACCCCAAGAAACCCCGCCGTCGAAAGAGAAGGGCCGCAAGAAAAAGGGCAACAAACAGGAGGAGAAGGCTCCTGATAACAAAATTGTACAAAAGCAAGACAAGAAGGAATTTGCAGCAGAGGATAAGGCTGATGACAGTGTTGTTGAGAAGAAGACGAACAAATCCAAAAAGAAGAAGGCCAAGGACAAAGTTGATGAGAAGAAGGATGATATTAAGGAGGTTATAGAGGTGAAAAGAAATGACAGAACAGATGATATACCCAAGAGAGCAGTAAAAATTGTTTTTGGATCCGAGAGTTCTATCCGGTTGCATATAATAGAAGCTACTCCTGAGCAGGATCGATTCTTTGAAATGCTCAAAGTAAAGGTGGGGAAAAAGGTTGTCGTGGTTGATGAACCTAATGTTGCTTGTGAGGTAAAACCAAAGCAAATTGTTGGGTCATCTTGCATTGAGGATTGGATAGTTCAGTTTGCCAAACTATTCAAGAACCATCTTGGATTTGAATCTGACAGATACCCGGATTTTCATGACCTTGGAATGAAATTCTATTCTGAGGCTTTGGAGGAGACTGTTACATGTAATGAAGCACAAGACTTGTTTAACATGGCAGGAGATAAATTCCAAGAGATGAGCGCTCTAGCATTGTTCCACGGGGGAAATGTGCTTGCTTCTATGGCAAGGAAGAAAGTATATGTCACAGAAGATTTTTCGAAAGAGAACATATGTGAACGGATCCAGAGTTGTTATGAATGGGCAAATGAACAATTTGCAAGTGCAGGAGAAAAATATGAAGCTGCCATTAGTATCAAACCTGATTTTTATGAAGCCTTCCTAGCACTAGGGCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATCATGCTGTCACTAGTAATGTCGATCTACAAACATGGTCATCCACCAAGGTTCTTCAGCTTTACAATGATGCTGAGGATAATATAGAGAAAGGGTTGCAGATATTTGAAGCATCAGGAGAAAAGAAACACTTGAATAAAGCCTTTAGTTCGAAGGATGCACGAAAACATCTACAAAACATGGGGTTGAATTTACTTATAAAAAATATACCCCCAGCTGAAATTGCTACACAGCAGGCAAGTATGAAGGCTCTGATTAATCTTCTTTGGGGTACCATGCTATATGAACGCTCGATTGTAGAATTCAAAATAGGCTCACCATCATGGAATGAAACTCTGGGAGTAGCAGCTGATAAGTTTGAACTTGCTGGAGCTTCTCCATCAGATATATCTTCAATGTCGAAGGATCACTGTTCCAATAATACTGCAGCAAATGGTCAGGAATTCAACATCGAGGAAATAGTACAGGCGTGGAATGATATCAATGAAACTAAAAGGTGGAAGCGTGTAATTCCGTCGTTTCGATTGGAGCCATTGCTTAGAAGGCGAGCTTCAAACCTTCATCAAGCATCTTAG 2022 0.4189 MGKKKRQVGETSEDGGNQSRVVVGDSSSIEYESDYASSSSMDVYQELKDEGNKLFQRRDPRGALLKYEQAIKLLPRNHADVSYLRSNMAACYMQMGRSQYPRAIRECDLALEVTPKYSKALLKRARCYEALNRLDLALKDVSAVVETDPNNATALEISEKVKIALEMKGLIVNGSIIELPPDYVEPPSALPQETPPSKEKGRKKKGNKQEEKAPDNKIVQKQDKKEFAAEDKADDSVVEKKTNKSKKKKAKDKVDEKKDDIKEVIEVKRNDRTDDIPKRAVKIVFGSESSIRLHIIEATPEQDRFFEMLKVKVGKKVVVVDEPNVACEVKPKQIVGSSCIEDWIVQFAKLFKNHLGFESDRYPDFHDLGMKFYSEALEETVTCNEAQDLFNMAGDKFQEMSALALFHGGNVLASMARKKVYVTEDFSKENICERIQSCYEWANEQFASAGEKYEAAISIKPDFYEAFLALGQQQFEQAKLSWYHAVTSNVDLQTWSSTKVLQLYNDAEDNIEKGLQIFEASGEKKHLNKAFSSKDARKHLQNMGLNLLIKNIPPAEIATQQASMKALINLLWGTMLYERSIVEFKIGSPSWNETLGVAADKFELAGASPSDISSMSKDHCSNNTAANGQEFNIEEIVQAWNDINETKRWKRVIPSFRLEPLLRRRASNLHQAS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61026g00004 673 SMART tpr_5 118 151 IPR019734 GO:0005515
Stsc61026g00004 673 SMART tpr_5 82 117 IPR019734 GO:0005515
Stsc61026g00004 673 SMART tpr_5 44 77 IPR019734 GO:0005515
Stsc61026g00004 673 Gene3D Tetratricopeptide repeat domain 368 549 IPR011990 GO:0005515
Stsc61026g00004 673 Gene3D Tetratricopeptide repeat domain 41 168 IPR011990 GO:0005515
Stsc61026g00004 673 MobiDBLite consensus disorder prediction 196 242 - -
Stsc61026g00004 673 SUPERFAMILY TPR-like 40 156 IPR011990 GO:0005515
Stsc61026g00004 673 MobiDBLite consensus disorder prediction 183 255 - -
Stsc61026g00004 673 PANTHER PROTEIN CLMP1 288 672 IPR044517 -
Stsc61026g00004 673 MobiDBLite consensus disorder prediction 1 28 - -
Stsc61026g00004 673 ProSiteProfiles TPR repeat profile. 118 151 IPR019734 GO:0005515
Stsc61026g00004 673 MobiDBLite consensus disorder prediction 12 28 - -
Stsc61026g00004 673 Coils Coil 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61026g00004 Stsc-Chr61026 8969 11285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61026g00004 15 151 Calmodulin-binding Proteins AT3G25230 30.061 3.02e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61026g00004 K26538 - gmx:100778972 738.413