Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61019g00004 ATGCGTGCTGGAGACAGGCCAAATATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGCAGAAGGTGTCAGCACTCTAAAACTAAGAGATACCTTTCCTCAAACTCTCTCAGACCCATCATCATCACCACTTATTATTGCAGGAAACACTACAAACAGAAACAATAACCTTGAAGAGAATATAAGGCTTTCTATGGAGGAGTTGTCCTATCACCACCAGCAAGAAGATGCCTCCAACTATGTAAATGGAGTCACTGTCACTACCATAGACATCCCACATCCACAGCATCTTGGTTTGAATATGGGTAACTCCTACAACAACAATAACAACATGGATTCCCATTTGCAATTTCAGCAAACTGAGGCACAGAACTGCAGCCAAAGTTACAATTCCTCCTCCATTTTGGACCCGCCTTACCCTTCACAAGATCTCCTAAACCTTCTCCACTTGCCAAGATGCTCAACTTCATCTTTGCTTGCCAACCCTGCTATCTGCATAGCAAACAAGACGCAGAATTTTCAGAATCCAATGGGATTTCTTGGGGACCTTCCAATAGGATCAGACAACACAAGTGCATCCTCAGTATTGTATGATCCTCTACTCCATTTGAACCTGCCTCCGCAGCCTCCAGCCCTCAGAGAGCTGTTTCAGTCTCTTCCCCGTGGCTATAGCTTGCCAACAAACTCAAGAAGCGGTTCTCTTTTCGGTGGAGGGGATGAGATTGAAGGAGATGGAAGCCAACTTGACATGGGAGTGCTTGACTTCAACAGGGTCACAGCTTCTGTGGGCAAAGGAAGGGAAGGGAAAGGTACCAAACACTTTGCAACTGAGAAACAAAGAAGAGAGCAACTGAATGGCAAATACAAAATCCTGAGGAGTCTTATCCCAAGCCCCACCAAGATGGATAGAGCCTCTGTGGTAGGTGATGCTATTGAATATATAAGGGAGCTGCTCAGAACGGTCAATGAGCTCAAATTACTGGTGGAGAAGAAAAGATATGGAAGGGAGAGGTGCAAAAGGAAGAAAACTGAAGATGATGCTGCAGAGAGCTGCAACATAAAGCCTTTCAGTGATCCAGATGGATGCATAAGGACCTCATGGCTTCAAAGGAAATCGAAAGATAGCGAGGTTGATGTGCGGATTGTTGATGATGATGTTACAATCAAACTCTTCCAGAGGAAGAAGATTAATTGTCTGCTTTCAGTCGCCAAGGTTCTGGATGAACTTCAGTTAGAACTTCACCATGTTGCAGGTGGACATGTTGGCGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATAGAAGGTTCTTCAGTCTATGCCAGTGCTATAGCCAACAGGGTTATCGATGTTATGGACACTCAATATGCAGCAGCAGTTCCACATACAAGTAGCTATTAG 1407 0.4435 MRAGDRPNMHEQTGCFDPNTMAEGVSTLKLRDTFPQTLSDPSSSPLIIAGNTTNRNNNLEENIRLSMEELSYHHQQEDASNYVNGVTVTTIDIPHPQHLGLNMGNSYNNNNNMDSHLQFQQTEAQNCSQSYNSSSILDPPYPSQDLLNLLHLPRCSTSSLLANPAICIANKTQNFQNPMGFLGDLPIGSDNTSASSVLYDPLLHLNLPPQPPALRELFQSLPRGYSLPTNSRSGSLFGGGDEIEGDGSQLDMGVLDFNRVTASVGKGREGKGTKHFATEKQRREQLNGKYKILRSLIPSPTKMDRASVVGDAIEYIRELLRTVNELKLLVEKKRYGRERCKRKKTEDDAAESCNIKPFSDPDGCIRTSWLQRKSKDSEVDVRIVDDDVTIKLFQRKKINCLLSVAKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVMDTQYAAAVPHTSSY 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61019g00004 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Stsc61019g00004 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 332 IPR036638 GO:0046983
Stsc61019g00004 468 MobiDBLite consensus disorder prediction 1 20 - -
Stsc61019g00004 468 Gene3D - 267 348 IPR036638 GO:0046983
Stsc61019g00004 468 PANTHER TRANSCRIPTION FACTOR BHLH91 8 461 IPR045895 GO:0006355|GO:0048658
Stsc61019g00004 468 CDD bHLH_AtMYC1_like 275 346 IPR045896 -
Stsc61019g00004 468 Pfam Helix-loop-helix DNA-binding domain 273 319 IPR011598 GO:0046983
Stsc61019g00004 468 SMART finulus 276 325 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61019g00004 Stsc-Chr61019 25337 27049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61019g00004 9 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 38.416 5.45e-92 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc61019g00004 HLH 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61019g00004 - - gmx:100782512 717.613