Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61017g00003 ATGGCCATTTCGTTAAACACACCGCTTCCCTTCCGCTTCCGCTTCCTCACACAACTACCTTCCTCCACCCCACCATCCTCATTCCCCCTTTCTAATTTAACCCTAAATTCACCCGCACTCAACCATAATCATGTTCGTTCTTCCAGGTTCAAGTTCCCTCCAGCAGCGAAGCTTCCCAGCATCAACTGCGATTACACCACTTTTGAAGTTAGAGATGTTAGCTATCAACCTCCGGGGACTCAGCTCAAGTTACTGAATTCAGTTAGTTTTTCACTTCCGGAGAAAAGTTTTGGTCTAATTTTCGGACAGAGTGGAAGTGGGAAAACAACTCTCTTGCAGCTTCTTGCAGGAATAAGCAAACCGACCACTGGATCCATTTACAGCCAAAAGTATGGAAATGATGGAAATCCCATCAAACCTCCGGAGCCCTTGTCACCAGAAAGAGTTGGTATTGTCTTCCAGTTCCCTGAGAGGTATTTTTTAGCTGAAAATGTGCTTGATGAGGTCACTTTTGGGTGGCCAAGGCAAAAGGGTAGCTATCAATTGAGAGAAAATCTTGCTTTAGGGCTTCAAAGGGCAATTAACTGGGTTGGATTGAATGGGATATCATTGGATAAACATCCTCACTCCCTTAGTGGCGGTTACAAACGTCGTCTTGCTTTGGCAATTCAATTAGTCCAAATTCCTGATCTCTTGATATTGGATGAGCCTCTTGCTGGACTTGATTGGAAAGCACGCGCAGATGTTGTGAAGCTTTTAAAGCATCTAAAAAAGGAGTTAACTGTGCTTGTTGTCAGCCATGACTTGAGAGAGTTCACAAGTCTTGTTGATCGATCATGGAAGATGGAGATGGGTGGCAACCTCAGAGAGGAGTCACTTCCATTGTAG 888 0.4459 MAISLNTPLPFRFRFLTQLPSSTPPSSFPLSNLTLNSPALNHNHVRSSRFKFPPAAKLPSINCDYTTFEVRDVSYQPPGTQLKLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGISKPTTGSIYSQKYGNDGNPIKPPEPLSPERVGIVFQFPERYFLAENVLDEVTFGWPRQKGSYQLRENLALGLQRAINWVGLNGISLDKHPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLREFTSLVDRSWKMEMGGNLREESLPL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61017g00003 295 PANTHER HEAVY METAL TRANSPORTER 69 293 - -
Stsc61017g00003 295 SMART AAA_5 94 286 IPR003593 GO:0016887
Stsc61017g00003 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 286 IPR027417 -
Stsc61017g00003 295 Pfam ABC transporter 85 238 IPR003439 GO:0005524
Stsc61017g00003 295 CDD ABC_cobalt_CbiO_domain1 69 285 IPR015856 GO:0005524|GO:0016020|GO:0055085
Stsc61017g00003 295 FunFam ABC transporter I family member 11 chloroplastic 57 293 - -
Stsc61017g00003 295 Gene3D - 61 293 IPR027417 -
Stsc61017g00003 295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 295 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61017g00003 Stsc-Chr61017 26092 31982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61017g00003 69 269 Calmodulin-binding Proteins AT2G36910 26.415 2.88e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61017g00003 - - vun:114196181 422.55