Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61013g00002 ATGGCTGCTGCTGCCAATCCTGTAGTTGGGTCCCAAGTTTGGTTGGAGGATCCAAACGAAGCTTGGATAGATGGTGAAGTTTTGGAGGTTAAGGGGCAAGACATCAAAGTCCTCTGCACTTCAGGGAAGACGGTTGTGGTTAAAGCGTCCAGCGTTTATCATAAAGATACCGAAGCCCCACCATGTGGAGTGGATGATATGACAAAGCTTGCTTATCTGCATGAACCTGGTGTCCTAGCTAATCTGAGATCTAGATATGACATCAATGAAATATATACGTATACTGGGAACATATTGATTGCTGTGAATCCTTTCATAAAGCTCCCCCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGCTTTTGGTGAGCTAAGTCCACATCCTTTTGCAGTTGCAGATGCAGCATACAGGCTTATGATTAATGAAGGAATCAGTCAGTCAATACTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACAGAAAGCACGAAGTTACTCATGCGCTATCTTGCTTACATGGGAGGTAGAGCTGCTGTTGGTGAAGGTAGGACTGTAGAGCAGAAAGTCCTAGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGGAAGTTTGTGGAGATCCAATTTGACAAGAGGGGAAGAATTTCTGGAGCT 699 0.4363 MAAAANPVVGSQVWLEDPNEAWIDGEVLEVKGQDIKVLCTSGKTVVVKASSVYHKDTEAPPCGVDDMTKLAYLHEPGVLANLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAVGEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKRGRISGA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61013g00002 233 SMART MYSc_2a 57 233 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc61013g00002 233 Pfam Myosin head (motor domain) 64 233 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc61013g00002 233 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc61013g00002 233 Gene3D Kinesin motor domain 12 233 IPR036961 -
Stsc61013g00002 233 ProSiteProfiles Myosin motor domain profile. 62 233 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc61013g00002 233 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc61013g00002 233 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc61013g00002 233 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc61013g00002 233 PANTHER MYOSIN 57 233 - -
Stsc61013g00002 233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 233 IPR027417 -
Stsc61013g00002 233 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61013g00002 Stsc-Chr61013 31419 34383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61013g00002 1 233 Myosins gene family AT1G04160 81.545 1.67e-134 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61013g00002 K10357 - gmx:100819463 437.573