Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61012g00001 ATGGAAATGGAAGGAGGAAATGGATCATCAAGTAAGAAAGCATATAATAGAGGGGCGTGGACAGCTGAGGAAGATGAAATGCTAGCTCAATGCATTGAGATTCATGGTGCCAAGAAGTGGAAGACCGTTGCAGCCAAATCAGGTTTAAACAGATGTGGAAAGAGTTGCCGGTTGAGATGGTTGAACTACCTTAGACCCAATATCAAGAGAGGCAACATCTCTGATGAAGAGGAGGATTTGATCATTAGGCTTCACAACTTGCTCGGAAACAGGTGGTCATTGATAGCTAAGAGGCTTCCAGGACGAACAGACAATGAGATCAAGAACTACTGGAATTCGTGTTTGTGCAAGAAGGTTAATCACAGAGACCAAAAACATCCTACCACTACTTCAACTATGCCACAGCAAACTTGTGCTGAGGGAATATCATTGGGCATGGATGGAGGAAGTGATGATCACATGGAAATGAAGTTTGATGCCAATGAATTTTTTGACTTCTCAACTGAATTGGATTGGGTCAACAAGTTTCTGGAGCTTGATGTAATCCCAGAGAGTTCAATGGAGTAG 567 0.4268 MEMEGGNGSSSKKAYNRGAWTAEEDEMLAQCIEIHGAKKWKTVAAKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHNLLGNRWSLIAKRLPGRTDNEIKNYWNSCLCKKVNHRDQKHPTTTSTMPQQTCAEGISLGMDGGSDDHMEMKFDANEFFDFSTELDWVNKFLELDVIPESSME 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61012g00001 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Stsc61012g00001 188 FunFam Myb transcription factor 17 69 - -
Stsc61012g00001 188 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Stsc61012g00001 188 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Stsc61012g00001 188 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Stsc61012g00001 188 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Stsc61012g00001 188 Gene3D - 9 70 - -
Stsc61012g00001 188 CDD SANT 19 64 IPR001005 -
Stsc61012g00001 188 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc61012g00001 188 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 9 134 - -
Stsc61012g00001 188 SMART sant 69 117 IPR001005 -
Stsc61012g00001 188 SMART sant 16 66 IPR001005 -
Stsc61012g00001 188 FunFam Transcription factor TT2 73 141 - -
Stsc61012g00001 188 Gene3D - 73 140 - -
Stsc61012g00001 188 CDD SANT 74 112 IPR001005 -
Stsc61012g00001 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61012g00001 Stsc-Chr61012 853 1608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61012g00001 15 171 MYB Transcription Factor Family AT5G40330 50.955 3.10e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc61012g00001 Myb_DNA-binding 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61012g00001 K09422 - tcc:18606229 248.825