Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61007g00007 ATGAAAACGAATAAAAGTAGAGCGAAATTGAATCAGTGTGCCTCCCCAGCCCAGCCGTGGAGTGGTCAAAGTTTTGTCCTGAAGGACAGTATTCCCCAAGAGGACTCACAGGGTTCTCCAAATGCTTATTCACCAATGGATGTGTCTCCATATCAGGAAAAACAGGTTGAAAGCCAATGCTTAAGTGAAAATTCAGTGACATCCAACAGCGAGTCGTTTAGTGTTGATAGCAACTATATGGTCAATGATTCAGAACAAACATCGATTGATCCCATAGATGAAGATCTAATTGCGGCTGCTGAGTGCTTGAATATTTATGGGGGAGAGGTTCCATGCAGGGAAACAAAGGAAGGAATTTCTAAGCATCCTATTCATGAAACTATTCGTGTTGAAGACAAACAGGATAGCTCTATTTCAGAGTTTGAAACTGAAAGCTTTAAGTCTGCTATTGATGAAGTGGGCATAAGTGTTGCATCTTGTAGATTAGCAGAAACTGAAGCCTATGATAGTAATAGAATGTTTCATCAAAGTCCTGTTTCTAGTCCAAGAAATGTAATTGGGTCTTCCTTCACATTTGCTGCTGCTCCATCAGCTGAAGTTCAATCATTGAGCCCAAAACGGCAACACAAAAAGAAACCTTGGCTAAATGTCGGCCATGATACTTACAACTACACTTCAAACATGAAGGTCCCTTATTCATCATCATCTGTGGCATTTTCTCCCCGTTCTACAACTTCATCACTTTTCACATCAGGCCCAGGTCTGAACACTAAAGTATCTTTGCCTCAACCCAAAACAAAGGATTCTGAGTTGAATAAGGAGCAGGGGCAGAAGGAGACTTCTGTTTCTGCTTCTACTTCAGCCATTGCTGCCCATGAAGCCTGTGAAAAGTGGCGGCTCAGAGGAAACCAAGCCTATAAAAATGGAGACCTGGAAATGGCTGAGAACTTTTACAAAGAAGGAATTAGTTGTATTCCTAAAGAAGCAACACCTCGTGCCTGTCTTAGGGCTTTGCTGCTATGTTATAGCAACCTTGCTGCCACACATATGTCTCTTGGTAGGATGAGGGATGCACTAGAAGATTGTATGATGGCCGCCAAATTAGATCCAAATTTCCTCAAGGTTCAAATTCGAGCTGCAAATTGTTACCTTGCCCTTGGGGAAGTTGAAGACGCATCAAAATACTTCAAAAAGTGCTTGCAATCTGGAATTGATGTTTGCGTAGATAGAAAACTTGCTGTGGAAGCCTCCGAAGGCTTACAAAACACACAGAAAGTGTCAGATTTGATCAACCTTTCTGCTGAGCTTTTACAAAGAAGCACATCTTCTGATGCAGAAGGTGCACTGCAACACATCAACGAAGCACTGATGATAAGTTCACACTCCGAAAAATTGCTTGAAATGAAAGCAGAGGCTCTTTCAATGTTGTGTAGATATGTGGAGGTGATTCAGCTTTGTGACGAGACCCTTGTTTCTGCTGAGAAGAATTCTTATCCATTTGATGTCATTACCCAAGTCACATATATGGATAATGCAGAACGCTCAAGAAGATTGTACTTCAGATTATGGCGGTGCTCAATGATGGTTAAAGCATACTTTTACCTAGGAAAGCTTGAAGAAGGCCTTTCTTTCCTGGAGAAACAAGAGGAAAAGTTATCTGCCATAAGCAAGAGCGGAGGCAAGGTTTTGGAACCACTCATACCACTAGCCATAACTATACAAGAACTTTTGCGTCACAAGGTTGCAGGGAATGAAGCATTTCAGGCTGGAAGGCACACAGAAGCTGTTGAGCATTATACATCTGCTTTATCTTGCAATGTGGAGTGTCGTCCATTTGCAGCTGTCTGTTACTGTAATCGTGCTGCTGCATATAAAGCCTTAGGTCAAATAACTGATGCTATTGCAGATTGCAGTCTAGCTATAGCACTCGATGGGAATTATTTGAAGGCACTTTCTAGACGTGCAACACTGTATGAAATGATTAGGGATTATGACCAAGCAGCCAGTGACCTTAGGAGACTTGTCTCCCTCCGTAGTAAGGAAGTGGAGGATACCACCAATCAACTTGGGTTATCTGATCGGTCAGTTAGTTATACAAATGAGTTGAAAAAAAATCGTACTCGGCTCAATGAAATAGAGGAGGAAGGAAGAAAGGAGGTCCCTCTTGATATGTACCTCATTTTGGGAGTTGAGCCATCTGCTTCATCATCTGAAATCAAGAAGGCCTATCGGAAAGCAGCACTTAGGCATCATCCAGACAAGGCTGGCCAATCTTTGAGGGATGATGGGATATGGAAGGATATTGCCGAAGAAGTACATAGAGATGCGGATAGGCTTTTCAAAATAATTGGCGAGGCATATGCTGTCCTATCAGACCCCACCAAGCGGGCACGATATGATGTGGAAGAAGAAATGAGGAATGCCCAAAAGAAACGCCAGGGAGCTATGCCTAGACCTAGTGCGGATACGCAGTGTTACTCATTTGAACAAAGTGGCAGGAGTAGATCATGGAGAGAGGTTCGAAGATCATACGGTAATTCAGTTCCTCGAAGTTTTGAACCTAGCCAACAAAGTAGGAAATAA 2583 0.4255 MKTNKSRAKLNQCASPAQPWSGQSFVLKDSIPQEDSQGSPNAYSPMDVSPYQEKQVESQCLSENSVTSNSESFSVDSNYMVNDSEQTSIDPIDEDLIAAAECLNIYGGEVPCRETKEGISKHPIHETIRVEDKQDSSISEFETESFKSAIDEVGISVASCRLAETEAYDSNRMFHQSPVSSPRNVIGSSFTFAAAPSAEVQSLSPKRQHKKKPWLNVGHDTYNYTSNMKVPYSSSSVAFSPRSTTSSLFTSGPGLNTKVSLPQPKTKDSELNKEQGQKETSVSASTSAIAAHEACEKWRLRGNQAYKNGDLEMAENFYKEGISCIPKEATPRACLRALLLCYSNLAATHMSLGRMRDALEDCMMAAKLDPNFLKVQIRAANCYLALGEVEDASKYFKKCLQSGIDVCVDRKLAVEASEGLQNTQKVSDLINLSAELLQRSTSSDAEGALQHINEALMISSHSEKLLEMKAEALSMLCRYVEVIQLCDETLVSAEKNSYPFDVITQVTYMDNAERSRRLYFRLWRCSMMVKAYFYLGKLEEGLSFLEKQEEKLSAISKSGGKVLEPLIPLAITIQELLRHKVAGNEAFQAGRHTEAVEHYTSALSCNVECRPFAAVCYCNRAAAYKALGQITDAIADCSLAIALDGNYLKALSRRATLYEMIRDYDQAASDLRRLVSLRSKEVEDTTNQLGLSDRSVSYTNELKKNRTRLNEIEEEGRKEVPLDMYLILGVEPSASSSEIKKAYRKAALRHHPDKAGQSLRDDGIWKDIAEEVHRDADRLFKIIGEAYAVLSDPTKRARYDVEEEMRNAQKKRQGAMPRPSADTQCYSFEQSGRSRSWREVRRSYGNSVPRSFEPSQQSRK 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61007g00007 860 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 849 - -
Stsc61007g00007 860 SMART tpr_5 576 609 IPR019734 GO:0005515
Stsc61007g00007 860 SMART tpr_5 614 647 IPR019734 GO:0005515
Stsc61007g00007 860 SMART tpr_5 295 328 IPR019734 GO:0005515
Stsc61007g00007 860 SMART tpr_5 648 681 IPR019734 GO:0005515
Stsc61007g00007 860 SMART tpr_5 463 496 IPR019734 GO:0005515
Stsc61007g00007 860 SMART tpr_5 339 372 IPR019734 GO:0005515
Stsc61007g00007 860 SMART tpr_5 373 406 IPR019734 GO:0005515
Stsc61007g00007 860 CDD DnaJ 723 792 IPR001623 -
Stsc61007g00007 860 SUPERFAMILY TPR-like 579 680 IPR011990 GO:0005515
Stsc61007g00007 860 MobiDBLite consensus disorder prediction 246 285 - -
Stsc61007g00007 860 SUPERFAMILY Chaperone J-domain 688 799 IPR036869 -
Stsc61007g00007 860 ProSiteProfiles dnaJ domain profile. 723 803 IPR001623 -
Stsc61007g00007 860 PRINTS DnaJ domain signature 725 743 IPR001623 -
Stsc61007g00007 860 PRINTS DnaJ domain signature 743 758 IPR001623 -
Stsc61007g00007 860 PRINTS DnaJ domain signature 775 795 IPR001623 -
Stsc61007g00007 860 Gene3D Tetratricopeptide repeat domain 575 695 IPR011990 GO:0005515
Stsc61007g00007 860 MobiDBLite consensus disorder prediction 804 860 - -
Stsc61007g00007 860 Pfam DnaJ domain 723 800 IPR001623 -
Stsc61007g00007 860 Pfam Tetratricopeptide repeat 375 401 IPR019734 GO:0005515
Stsc61007g00007 860 Gene3D DnaJ domain 709 821 IPR036869 -
Stsc61007g00007 860 ProSitePatterns Nt-dnaJ domain signature. 780 799 IPR018253 -
Stsc61007g00007 860 MobiDBLite consensus disorder prediction 246 266 - -
Stsc61007g00007 860 SMART dnaj_3 722 795 IPR001623 -
Stsc61007g00007 860 Gene3D Tetratricopeptide repeat domain 294 561 IPR011990 GO:0005515
Stsc61007g00007 860 Coils Coil 695 715 - -
Stsc61007g00007 860 MobiDBLite consensus disorder prediction 1 72 - -
Stsc61007g00007 860 SUPERFAMILY TPR-like 296 401 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61007g00007 Stsc-Chr61007 22553 28378 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61007g00007 725 800 C2H2 Transcription Factor Family AT1G74250 36.842 7.89e-06 47.8