Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61007g00006 ATGAAAACGAATAAAAGTAGAGCGAAATTGAATCAGTGTGCCTCCCCAGCCCAGCCGTGGAGTGGTCAAAGTTTTGTCCTGAAGGACAGTATTCCCCAAGAGGACTCACAGGGTTCTCCAAATGCTTATTCACCAATGGATGTGTCTCCATATCAGGAAAAACAGGTTGAAAGCCAATGCTTAAGTGAAAATTCAGTGACATCCAACAGCGAGTCGTTTAGTGTTGATAGCAACTATATGGTCAATGATTCAGAACAAACATCGATTGATCCCATAGATGAAGATCTAATTGCGGCTGCTGAGTGCTTGAATATTTATGGGGGAGAGGTTCCATGCAGGGAAACAAAGGAAGGAATTTCTAAGCATCCTATTCATGAAACTATTCGTGTTGAAGACAAACAGGATAGCTCTATTTCAGAGTTTGAAACTGAAAGCTTTAAGTCTGCTATTGATGAAGTGGGCATAAGTGTTGCATCTTGTAGATTAGCAGAAACTGAAGCCTATGATAGTAATAGAATGTTTCATCAAAGTCCTGTTTCTAGTCCAAGAAATGTAATTGGGTCTTCCTTCACATTTGCTGCTGCTCCATCAGCTGAAGTTCAATCATTGAGCCCAAAACGGCAACACAAAAAGAAACCTTGGCTAAATGTCGGCCATGATACTTACAACTACACTTCAAACATGAAGGTCCCTTATTCATCATCATCTGTGGCATTTTCTCCCCGTTCTACAACTTCATCACTTTTCACATCAGGCCCAGGTCTGAACACTAAAGTATCTTTGCCTCAACCCAAAACAAAGGATTCTGAGTTGAATAAGGAGCAGGGGCAGAAGGAGACTTCTGTTTCTGCTTCTACTTCAGCCATTGCTGCCCATGAAGCCTGTGAAAAGTGGCGGCTCAGAGGAAACCAAGCCTATAAAAATGGAGACCTGGAAATGGCTGAGAACTTTTACAAAGAAGGAATTAGTTGTATTCCTAAAGAAGCAACACCTCGTGCCTGTCTTAGGGCTTTGCTGCTATGTTATAGCAACCTTGCTGCCACACATATGTCTCTTGGTAGGATGAGGGATGCACTAGAAGATTGTATGATGGCCGCCAAATTAGATCCAAATTTCCTCAAGGTTCAAATTCGAGCTGCAAATTGTTACCTTGCCCTTGGGGAAGTTGAAGACGCATCAAAATACTTCAAAAAGTGCTTGCAATCTGGAATTGATGTTTGCGTAGATAGAAAACTTGCTGTGGAAGCCTCCGAAGGCTTACAAAACACACAGAAAGTGTCAGATTTGATCAACCTTTCTGCTGAGCTTTTACAAAGAAGCACATCTTCTGATGCAGAAGGTGCACTGCAACACATCAACGAAGCACTGATGATAAGTTCACACTCCGAAAAATTGCTTGAAATGAAAGCAGAGGCTCTTTCAATGTTGTGTAGATATGTGGAGGTGATTCAGCTTTGTGACGAGACCCTTGTTTCTGCTGAGAAGAATTCTTATCCATTTGATGTCATTACCCAAGTCACATATATGGATAATGCAGAACGCTCAAGAAGATTGTACTTCAGATTATGGCGGTGCTCAATGATGGTTAAAGCATACTTTTACCTAGGAAAGCTTGAAGAAGGCCTTTCTTTCCTGGAGAAACAAGAGGAAAAGTTATCTGCCATAAGCAAGAGCGGAGGCAAGGTTTTGGAACCACTCATACCACTAGCCATAACTATACAAGAACTTTTGCGTCACAAGGTTGCAGGGAATGAAGCATTTCAGGCTGGAAGGCACACAGAAGCTGTTGAGCATTATACATCTGCTTTATCTTGCAATGTGGAGTGTCGTCCATTTGCAGCTGTCTGTTACTGTAATCGTGCTGCTGCATATAAAGCCTTAGGTCAAATAACTGATGCTATTGCAGATTGCAGTCTAGCTATAGCACTCGATGGGAATTATTTGAAGGCACTTTCTAGACGTGCAACACTGTATGAAATGATTAGGGATTATGACCAAGCAGCCAGTGACCTTAGGAGACTTGTCTCCCTCCGTAGTAAGGAAGTGGAGGATACCACCAATCAACTTGGGTTATCTGATCGGTCAGTTAGTTATACAAATGAGTTGAAAAAAAATCGTACTCGGCTCAATGAAATAGAGGAGGAAGGAAGAAAGGAGGTCCCTCTTGATATGTACCTCATTTTGGGAGTTGAGCCATCTGCTTCATCATCTGAAATCAAGAAGGCCTATCGGAAAGCAGCACTTAGGCATCATCCAGACAAGGCTGGCCAATCTTTGAGGGATGATGGGATATGGAAGGATATTGCCGAAGAAGTACATAGAGATGCGGATAGGCTTTTCAAAATAATTGGCGAGGCATATGCTGTCCTATCAGACCCCACCAAGCGGGCACGATATGATGTGGAAGAAGAAATGAGGAATGCCCAAAAGAAACGCCAGGGAGCTATGCCTAGACCTAGTGCGGATACGCAGTGTTACTCATTTGAACAAAGTGGCAGGAGTAGATCATGGAGAGAGGTTCGAAGATCATACGTTTGA 2538 0.4263 MKTNKSRAKLNQCASPAQPWSGQSFVLKDSIPQEDSQGSPNAYSPMDVSPYQEKQVESQCLSENSVTSNSESFSVDSNYMVNDSEQTSIDPIDEDLIAAAECLNIYGGEVPCRETKEGISKHPIHETIRVEDKQDSSISEFETESFKSAIDEVGISVASCRLAETEAYDSNRMFHQSPVSSPRNVIGSSFTFAAAPSAEVQSLSPKRQHKKKPWLNVGHDTYNYTSNMKVPYSSSSVAFSPRSTTSSLFTSGPGLNTKVSLPQPKTKDSELNKEQGQKETSVSASTSAIAAHEACEKWRLRGNQAYKNGDLEMAENFYKEGISCIPKEATPRACLRALLLCYSNLAATHMSLGRMRDALEDCMMAAKLDPNFLKVQIRAANCYLALGEVEDASKYFKKCLQSGIDVCVDRKLAVEASEGLQNTQKVSDLINLSAELLQRSTSSDAEGALQHINEALMISSHSEKLLEMKAEALSMLCRYVEVIQLCDETLVSAEKNSYPFDVITQVTYMDNAERSRRLYFRLWRCSMMVKAYFYLGKLEEGLSFLEKQEEKLSAISKSGGKVLEPLIPLAITIQELLRHKVAGNEAFQAGRHTEAVEHYTSALSCNVECRPFAAVCYCNRAAAYKALGQITDAIADCSLAIALDGNYLKALSRRATLYEMIRDYDQAASDLRRLVSLRSKEVEDTTNQLGLSDRSVSYTNELKKNRTRLNEIEEEGRKEVPLDMYLILGVEPSASSSEIKKAYRKAALRHHPDKAGQSLRDDGIWKDIAEEVHRDADRLFKIIGEAYAVLSDPTKRARYDVEEEMRNAQKKRQGAMPRPSADTQCYSFEQSGRSRSWREVRRSYV 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61007g00006 845 Gene3D Tetratricopeptide repeat domain 575 695 IPR011990 GO:0005515
Stsc61007g00006 845 Pfam DnaJ domain 723 800 IPR001623 -
Stsc61007g00006 845 SMART tpr_5 576 609 IPR019734 GO:0005515
Stsc61007g00006 845 SMART tpr_5 614 647 IPR019734 GO:0005515
Stsc61007g00006 845 SMART tpr_5 295 328 IPR019734 GO:0005515
Stsc61007g00006 845 SMART tpr_5 648 681 IPR019734 GO:0005515
Stsc61007g00006 845 SMART tpr_5 463 496 IPR019734 GO:0005515
Stsc61007g00006 845 SMART tpr_5 339 372 IPR019734 GO:0005515
Stsc61007g00006 845 SMART tpr_5 373 406 IPR019734 GO:0005515
Stsc61007g00006 845 CDD DnaJ 723 792 IPR001623 -
Stsc61007g00006 845 Gene3D Tetratricopeptide repeat domain 294 561 IPR011990 GO:0005515
Stsc61007g00006 845 SUPERFAMILY TPR-like 579 680 IPR011990 GO:0005515
Stsc61007g00006 845 PRINTS DnaJ domain signature 743 758 IPR001623 -
Stsc61007g00006 845 PRINTS DnaJ domain signature 725 743 IPR001623 -
Stsc61007g00006 845 PRINTS DnaJ domain signature 775 795 IPR001623 -
Stsc61007g00006 845 MobiDBLite consensus disorder prediction 246 285 - -
Stsc61007g00006 845 SUPERFAMILY Chaperone J-domain 688 799 IPR036869 -
Stsc61007g00006 845 SUPERFAMILY TPR-like 296 401 IPR011990 GO:0005515
Stsc61007g00006 845 ProSiteProfiles dnaJ domain profile. 723 803 IPR001623 -
Stsc61007g00006 845 ProSitePatterns Nt-dnaJ domain signature. 780 799 IPR018253 -
Stsc61007g00006 845 MobiDBLite consensus disorder prediction 246 266 - -
Stsc61007g00006 845 Gene3D DnaJ domain 709 821 IPR036869 -
Stsc61007g00006 845 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 844 - -
Stsc61007g00006 845 SMART dnaj_3 722 795 IPR001623 -
Stsc61007g00006 845 Pfam Tetratricopeptide repeat 375 401 IPR019734 GO:0005515
Stsc61007g00006 845 Coils Coil 695 715 - -
Stsc61007g00006 845 MobiDBLite consensus disorder prediction 804 845 - -
Stsc61007g00006 845 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61007g00006 Stsc-Chr61007 22553 28378 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61007g00006 725 800 C2H2 Transcription Factor Family AT1G74250 36.842 7.99e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61007g00006 K09527 - gmx:100800435 1118.22