Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60g00015 ATGATTCTGTTCAGGATTCTGCTCCTAGAAAGAAGCAAGCAAATTCTGATGAATCAGATTATGAGAGTGATATTTCAAACGACGATGATGATGAAAGAAGTGNNNNNNNNNNCAAGAAAGTGGGAACCCCTGATAAATCGTGTTTTGAGATCAGAATCTGGATTACTTATCACAACTTATGAGCAAATCAGAATATTGGGGGACCAGTTGCTTGACATTGAATGGGGATATGCTGTTCTTGATGAAGGACATAGAATAAGAAATCCTAATGCTGAAGTCACCCTTGTTTGTAAACAGCTACAAACTGTGCACCGCATTATAATGACTGGTGCACCTATTCAGAACAAGCTGTCAGAACTCTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTAGGTGTGCTGCCTGTATTTGAAGCAGAATTTGCAGTTCCTATTGCTGTTGGTGGTTATGCAAATGCTTCACCATTACAAGTATCTACAGCATACAGGTGTGCCGTGGTGCTGCGGGATTTAATCATGCCTTATCTTCTTCGACGCATGAAGGCTGATGTGAATGCTCAGCTTCCAAATAAAACTGAGCACGTCCTATTCTGCAGCCTCACATCAGAGCAAATATCTGCTTATAGAGCATTTTTAGCAAGTTCGGAAGTGGAGCAAATATTGGATGGACACAAGAATTCTCTTTCTGGAATTGATGTGATGCGTAAGATCTGCAATCACCCTGACCTACTTGAAAGAGATCATGCCTCAAGTAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAGGTTGTAGCTCAAGTGCTCAATGTTTGGAAGGAGCAAGGTCACCGTGTTCTTCTTTTTACTCAAACCCAGCAAATGCTCGACATTTTTGAGAATTTTTTAACAACTTCTGGGCATATTTATAGGAGAATGGATGGTCTCACTCCCGTAAAACAGAGAATGGCTTTAATAGACGAATTCAATGCCTCAAGTGATATATTTGTTTTTATTCTAACAACCAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAAACAGGGTGATAATCTTTGACCCTGATTGGAATCCTTCAAATGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGACGTAACAGTTTATAGGTTGATCACACGGGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAAATACTTAAGAATCCGCAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTTACATTGAATGTGGATGAAGAAAATGGGTCGACTGAAACATCAAATATTTTCGGTCAAATATCTGAAGGACTAAATGTGGTTGGGACACACACAAACAACCAGGAGAATCATAAACTTACCAAGACTACTGAACTGGTTTCTGAAGACGTTGCACCTGATAACGATGACCAATCACAGAGTGGATCTCCGAGTGGAAAGGGGAAAGGGAAAACTGAACATGGTGATGGGGTTGATGAGGAAACAAATATATTGAAGAGTCTTTTTGGTGCCAATGGAGTACATAGTGCCTTGAACCATGATATGATTGTGAATGCCAATGATGAGGAGAAACTGAGGCTTCAGGAGGAAGCATCCAAGGTTGCACAAAGAGCTGCAGAAGCTTTACGCCAATCGCGAATGCTCAGAAGTCATGACAGCGTCTCTGTTCCTACATGGACGGGAAGGTCTGGAGCTGCTGGTGCACCAGCATCTGTTAAGCGGAAATTCGGTTCAACTGTGAATGCCCAGTTGATAAATAATAGCATAGCATCTGACGGATCACCCAGCAATGGAACTAAAAAATTGAATGGATTTGCTGCCGGAGCGACGTCTGGGAAGGCATTATCTTCTGCTGAACTTTTGGCACGAATTCGTGTCAACCAAGATAATGCTGTTGGTGCTGGTCTCGAACATCATTTTGGTACAAGCTCAAGTTCCACTAATCAAGCAAGATCTACAGATGTCAGATCTTCTAGGGCTTCTGAAAATACATCTGGCACGCAACCCGAAGTATTGATTCAGCAAATATGTACATTTCTACAACAGCGAGGCGGCAGTTCCAGTTCAGCCAGCATAGTTCAGTATTTCAAGGACAGAATACCCTCTAAAGATCTTGCTTTGTTCAAGAATCTGTTAAAAGAAATAGCTACTCTGCATAAAGGGCCAAGTGGATCGAATTGGGTTCTGAAGCCAGACTACCAATAA 2250 0.4142 MILFRILLLERSKQILMNQIMRVIFQTTMMMKEVXXXXRKWEPLINRVLRSESGLLITTYEQIRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTSEQISAYRAFLASSEVEQILDGHKNSLSGIDVMRKICNHPDLLERDHASSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNASSDIFVFILTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDEENGSTETSNIFGQISEGLNVVGTHTNNQENHKLTKTTELVSEDVAPDNDDQSQSGSPSGKGKGKTEHGDGVDEETNILKSLFGANGVHSALNHDMIVNANDEEKLRLQEEASKVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGAAGAPASVKRKFGSTVNAQLINNSIASDGSPSNGTKKLNGFAAGATSGKALSSAELLARIRVNQDNAVGAGLEHHFGTSSSSTNQARSTDVRSSRASENTSGTQPEVLIQQICTFLQQRGGSSSSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGPSGSNWVLKPDYQ 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60g00015 749 MobiDBLite consensus disorder prediction 650 682 - -
Stsc60g00015 749 SMART helicmild6 293 376 IPR001650 -
Stsc60g00015 749 CDD CSB_WHD 682 749 - -
Stsc60g00015 749 PANTHER SNF2/RAD54 FAMILY MEMBER 37 732 - -
Stsc60g00015 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 436 IPR027417 -
Stsc60g00015 749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 267 426 IPR001650 -
Stsc60g00015 749 Pfam Helicase conserved C-terminal domain 269 376 IPR001650 -
Stsc60g00015 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 180 IPR027417 -
Stsc60g00015 749 FunFam DNA excision repair protein ERCC-6 187 465 - -
Stsc60g00015 749 FunFam DNA excision repair protein ERCC-6 41 179 - -
Stsc60g00015 749 MobiDBLite consensus disorder prediction 654 682 - -
Stsc60g00015 749 Gene3D - 18 179 IPR038718 -
Stsc60g00015 749 Gene3D - 186 476 IPR027417 -
Stsc60g00015 749 MobiDBLite consensus disorder prediction 458 512 - -
Stsc60g00015 749 Pfam SNF2-related domain 49 244 IPR000330 GO:0005524|GO:0140658
Stsc60g00015 749 CDD SF2_C_SNF 262 387 - -
Stsc60g00015 749 MobiDBLite consensus disorder prediction 481 495 - -
Stsc60g00015 749 Coils Coil 539 559 - -
Stsc60g00015 749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 130 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60g00015 Stsc-Chr60 133872 137771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60g00015 262 430 RAD5 or RAD16-like Gene Family AT5G22750 32.544 3.96e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc60g00015 SNF2_N 3.5e-40 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60g00015 K10841 - gmx:100820025 1218.37