Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc609g00006 ATGGATCTGCAATCTCCCTTCTCCTCAATCCATTCCTTCAACTATGAATATGAATGGAAATACGATGTGTTTCTTAGCTTTAGAGGCAAAGACACTCGATATGGTTTCACTGGCAATCTTTATAAAGCCCTTTCCGCCAAAGGAATCCACACCTTCTTTGATGATCATGACATTCAAAGTGGAGACGAAATTACTCCCATGCTTCTCACAGCAATTCAAGAGTCTAGGATTGCTATCATTGTCCTCTCTCCTGACTATGCTGCTTCTTCTTTTTGCTTAAACGAGCTTGCTGAGATCCTTATTTGCATTAAGGGGAATAATCGCTTGGTTGTCCCAGTTTTCTTTGATGTGGATCCTTCTGATGTACGCCATCAAAAAAACAATTTCAAAGAAGCAATGGATAAGCATGAGAAGAGATACAAGGATGACATGAATAAGGTGCAAAAATGGAAGGAGGCTCTGCATCAAGTGGCTAATTTGTCTGGCTATCATTTCAAACACGGGAAAGGATATGAACACATGTTTATTGCAAACATTGTTGAAGACATCTCAAAAAGGATTACACGGCGGCCAGCTTTGCATGTTGCTGATCACCCAGTTGGACTGCAATCCCAAGTGTCAAAGGTAGCTACGCTTCTACAAGTTGAATCTAATGATGGAGTTCACATGGTAGGGATATATGGAATTGGGGGAATAGGAAAAACAACACTTGCTGCTGCAGTTTACAACTTCATTGCTGACCATTTTGAAGGTGCGTGCTTTCTTGAAAAAGTTAGAGAAAATTCAAGTAGACACGGTTTAGTACATCTCCAGAATATCCTTCTTTCTGAGATATTACGAGAGAATGATATTAAACTAACCAGTAGTAAACAAGGAGCTTCAAAGATACGTAACAGGCTATGTCGAAAGAAAGTTCTTTTGGTTCTCGATGATGTTGATGATCCGGAGCAGTTGAAAGCTATTGCGGGAAAACCTGAGTGGTTTGGTACTGGTAGCAGACTCATTATTACAACACGGGATAATCATTTGCTAACACTTCATGGTGTTGAAAGAACATATGAAGTACAAGGTTTAAATGAGGTGGACTCCTTAAATTTGCTTACTTGGAATGCTTTCAAATCTGATATTGTTAGTCCAAGTTACATGAATGTTTTATCCCGTGTAGTGGCTTATGCTTCTGGGCTTCCGTTGGCTTTGGAAGTAATAGGTTCTAACTTGTTTGGAAAGGATTTACAAGAATGGGAATCTTTATTGGATCAATATGAAAGAAATAATCTTGATAATAAGATACGTAAGATCCTTCAAATAAGTTTTGACTCTTTGGAAAAAGATGAACAAAGTGTTTTTCTTGATATTGCTTGTTGTTTTAATGGATATACATTAGTTGAAGTTAAAAATTTGCTTCAAGCTCATTACGGGAGATGCATGAAATATCATATTGGAGTGTTGTTTGAAAAAAATCTCATAAAAATTCTATATGATGGAAATGTGGCAATACATGATTTGATAGAGGACATGGGTAAAGAAATTGTTCTGGAAGAATCACCGAGAAGGCCTGGAAAGCGTAGTAGATTATGGTGTTATGAAGATATAGTAAAAGTTTTAGAAAACAATCAAGGGACTAGAGCCATTGAAATTGTATATCTAGATTTTCCTTTATCTAAAAGAAAAGGAAATGAAGTGAGATGGGATGGAACAGCATTTAAAGGGATGAAAAATCTGAAAATGCTTATCGTAAAAAATGGTTGTTTTTCGAGAAGTCCTAAACATCTTCCAAACAGTTTAAGAGTGTTGGAATGGTGGAGATATCCTTCAAAATGTTTTCCACATGATTTTCATCCAGAGAAGCTCATCATTCTGAAGTTACCTGATTATCCCCATCCCTTTCCCGAGCTTGATAGCTTATTCAAGGCAAGTAGTTTGGTCAACTTAATAGTTTTGAAATTTGATTACAGTGAGTTTCTAAAAGAGATACCCGATGTGTCTAGTCTTCAAACTTTACAAGAATTATCTTTCAGAGAATGTAAAAATTTAGTTACAGTTGAGAGTTCAGTTGGTTTTCTACCTAAGCTTAAAATATTGGATGCTTTTAATTGTGAGAAGCTTAGTTGTTTTCCGCCTGCTATCAATTTGCCCTCGCTGGAAACACTCGAGCTATGTGGTTGCCAAAGTCTTGAGAATTTTCCAGAAATACTACAAGAGATGAAAAATGTAACTAGGCTTCGGTTGGAGAGCACGGGCATAAAGTATTTGCCACCTTCATTTGGTAACCTTTCTGGGTAG 2283 0.371 MDLQSPFSSIHSFNYEYEWKYDVFLSFRGKDTRYGFTGNLYKALSAKGIHTFFDDHDIQSGDEITPMLLTAIQESRIAIIVLSPDYAASSFCLNELAEILICIKGNNRLVVPVFFDVDPSDVRHQKNNFKEAMDKHEKRYKDDMNKVQKWKEALHQVANLSGYHFKHGKGYEHMFIANIVEDISKRITRRPALHVADHPVGLQSQVSKVATLLQVESNDGVHMVGIYGIGGIGKTTLAAAVYNFIADHFEGACFLEKVRENSSRHGLVHLQNILLSEILRENDIKLTSSKQGASKIRNRLCRKKVLLVLDDVDDPEQLKAIAGKPEWFGTGSRLIITTRDNHLLTLHGVERTYEVQGLNEVDSLNLLTWNAFKSDIVSPSYMNVLSRVVAYASGLPLALEVIGSNLFGKDLQEWESLLDQYERNNLDNKIRKILQISFDSLEKDEQSVFLDIACCFNGYTLVEVKNLLQAHYGRCMKYHIGVLFEKNLIKILYDGNVAIHDLIEDMGKEIVLEESPRRPGKRSRLWCYEDIVKVLENNQGTRAIEIVYLDFPLSKRKGNEVRWDGTAFKGMKNLKMLIVKNGCFSRSPKHLPNSLRVLEWWRYPSKCFPHDFHPEKLIILKLPDYPHPFPELDSLFKASSLVNLIVLKFDYSEFLKEIPDVSSLQTLQELSFRECKNLVTVESSVGFLPKLKILDAFNCEKLSCFPPAINLPSLETLELCGCQSLENFPEILQEMKNVTRLRLESTGIKYLPPSFGNLSG 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc609g00006 760 Gene3D - 15 187 IPR035897 -
Stsc609g00006 760 Coils Coil 411 431 - -
Stsc609g00006 760 Gene3D - 357 442 IPR042197 -
Stsc609g00006 760 SUPERFAMILY "Winged helix" DNA-binding domain 428 536 IPR036390 -
Stsc609g00006 760 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 732 IPR044974 GO:0006952
Stsc609g00006 760 Pfam TIR domain 20 186 IPR000157 GO:0007165
Stsc609g00006 760 Gene3D - 188 350 IPR027417 -
Stsc609g00006 760 Pfam NB-ARC domain 204 439 IPR002182 GO:0043531
Stsc609g00006 760 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Stsc609g00006 760 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 189 - -
Stsc609g00006 760 SMART till_3 20 160 IPR000157 GO:0007165
Stsc609g00006 760 Coils Coil 126 153 - -
Stsc609g00006 760 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 163 IPR035897 -
Stsc609g00006 760 PRINTS Disease resistance protein signature 392 406 - -
Stsc609g00006 760 PRINTS Disease resistance protein signature 223 238 - -
Stsc609g00006 760 PRINTS Disease resistance protein signature 709 725 - -
Stsc609g00006 760 PRINTS Disease resistance protein signature 299 313 - -
Stsc609g00006 760 SUPERFAMILY L domain-like 562 759 - -
Stsc609g00006 760 Gene3D Ribonuclease Inhibitor 508 760 IPR032675 -
Stsc609g00006 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 452 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc609g00006 Stsc-Chr609 31115 33697 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc609g00006 21 758 WRKY Transcription Factor Family AT4G12020 31.406 2.12e-78 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc609g00006 - - ahf:112751488 1023.46