Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc609g00003 ATGGATCTCCAATCTCCCTTCTCCTCCTCCTCAACTCGTTCCTTCAACTTTCAGAAAGAATGGAAATACGATGTATTTCTTAGCTTTAGAGGCAAAGACACTCGCTATGTTTTCACTCGCAATCTTTATGAAGCTCTTTCCCGCAAAGGAATCCACACCTTCTTTGATGATGATGACATTCAAAGTGGAGACGAAATTACTCCCACGCTTCTCACAGCAATTCAAGAGTCTAGGATTGCTATCATTATCCTCTCTCCAGACTATGCTTCTTCTTCTTTTTGCTTAGATGAGCTTGTTCACATCCTTCGTTGCATTAAGGCAAATAATCGCTTGGTTGTGCCGGTTTTCTATGATGTGGATCCTTGTGATGTACGCCATCAAAGAAACAAGTTCAAAGAAGCAATGGATAAGCATGAGAAGAGATACAAGGATGACATGAACAAGGTGCAAAAATGGAAGGAGGCTCTGCATCAAGTGGCTAATTTGTCTGGCTATCATTTCGGACCCGGGAAAGGATATGAACACATGTTTATTGCAAACATTGTGAAAAACATCTCAAAAAGGATTACACGACGCCCAGCTTTGCATGTTGCTGATCACCCAGTTGGACTGAAATCCCAAGTGTCAGAGGTAGCTTCGCTTCTACATGTTGAATCTAATGCTGGAGTTCACATGGTAGGGATATATGGAATTGGGGGAATGGGAAAAACGACACTTGCTGCTGCCGTTTACAACTTGATTGCTGACCATTTTGAAGGTGCGTGCTTTCTTGAAAAAGTGAGAGAAAATTCAGAAAGATACGGTTTAGTACATCTCCAAAATATCCTTCTTTCTCAGATATTAGGAGAGAACGATATTAATCTAGCAAGTAGTAAACAAGGAGCTTCAAAGATACATAACAGGCTATGTCGAAAGAAAGTTCTTTTGGTTCTCGATGATGTTAACGAGCAGGAGCAGTTGAAAGCTATTGCTGGAAAACCTGAGTGGTTTGGTCCTGGTAGCAGACTCATTATTACAACACGGGATAAACATTTGCTAACACTTCATGGTGTTAAAAGAACATACCAAGTACGAGGATATGAATTAGGTGAAGTTACAGATATGCTTCATGCTCATTATGGGAGTTGCATGAAATATCATATTGGAGTGTTGGTTCAAAAATCTCTCATAATGATCAACAGGTATGACTGGAAAGTGGAAATACATGATTTGCTAGAAGACACAGGCAAACAAATTTTTCTAGAAAAATCACCGGAAATGCCTGGAAAGCGTAGTAGGTTATGGTCTTGTGAAGATATAGTACGGGTTTTAGAAAACAATCAAGGGACTAGTGCCATTGAAATTATATATCTAGAATTTCCTTTCTTTAGAAGAGAAAGAGATGAAGATCCAATGACAAAAGAGGAATGTAAAGATGTTAAAGTGAAATGGGATGGAGCGGCATTTAAAGAGATGAAAAATCTCAAAACGCTGATCATAAAAAATGGTTATTTTTCGAGAAGTCCTAAACATCTTCCAAACAGTTTAAGAGTGATGGAATGGTGGAGATATCCTGCAAATTGTTTTCCATATGATTTTCATCCAAAGAAGCTCACCATACTCAAGTTACCTGATTATCTCCATCCGATACGCGAGTTGAATAGCTTATCGAAGGGGTTGGTCACCTTAACAGTCTTGAATTTTGATTACAGTAAATTTTTAAAAGAGATACCAGACGTGGCTAGCCTTCAAAATTTACAAGCAATATCTTTCGTAGGATGTAGGAATTTAGTTAGAGTTGACAGTTCAGTTGGTTTTCTACCCAAGCTTAAAATATTGAAAGCTAATGATTGTAAAAAGCTTAGTTGTTTTCCACCTGCTATCAATTTGCCCTCGTTGGAGACACTCGGCCTATCTGGTTGCCGAAGCCTCGAGAATTTTCCAGAAATACTACGAGAGATGAAACATGTAACTAGCCTTTGGTTGTACAGCACTGGCATAAAAGATTTGTCATGTTCATTTCGTAACCTTTCTGCATTGTCGCATCTGGATATAAGAGAGAGTAAAATGTGTAGGGTTCCAAGTGTCGTTGGCATGATGCCACAACTGGTTGTTTTTATTATTGAGGCTGAGGGAGGTGACAATGAGGGGAAGGTATCAGGAAAGCCGGAGAAGGAGGGGCTTCAACTTCAACTTCAAGGAATACTCACTCATTCCCTCTGCTCTCCAAAACTAGAATCTCTTGAACTCAACAACTGCGAGCTTTCAGATGGTTTTTTTCCGCTGGCTGTTGCATGGTTTCCTAATCTGACCAAGTTAGAGTTAGGAGGCAGTAATTTCACAATCCTTCCTGAATGCATTCAAGAATTTTGCTTTCTGTGGAATCTCAATGTGGATGAATGCGAGCATCTTCGGGAGATTAGAGGGATTCCACCATGCTTGAGATTCTTCTCAGCAATAAATTGCAAATCATTGAGTCACAGGGGCACAAGCGTGTTACTCAATCAGGAACCGCACGTGGATAGCTGGATTCATTTTGTTATGCCAGGAAGGATTCCAAGGTGGTTTGAGCAGCGGAGCAGGGGACCTTCTATTTCTTTCTGGTTTCGTGGCAACCATTTCCCTGGCAATGCTCTTCTCGTTGCCATTCTCCTCACGGATGACCTCCATTGCAACCCATGGCTAATTGAATTAACACCCATTGTGACCATCAAGGACAAAGAGTTTCCCTTGAGACACCGAACCCGAATGGAGCAATTATTTGTTTTTGATCTGTCAAGTATAACCAACTCTTCTAAAAATGGATGGAATCATGCACAGGTTTCTTATACAGCAATAACACATTCTGTTGGGAAATGTGAGTACCATGATGTCCAAATTGAGTCAATTGCAAAAGAGATTGGAATGCACGTACGGAAGCAAAAGAACAGTAGTATCATGCAAGATATTCGGTTCACTGATCCTTACAAAATGACAGGATTAATTATAATGATGATGATGGTGTCAATGGCATTGCCGAACCACAAGAACCAACCCTTGCTCCTCCAAACACGCATTGGTTTGTGGACATTGCTCTTTCTCACACACACTGCTTTGGGCACCAACACTCTTAGTTAG 3096 0.4044 MDLQSPFSSSSTRSFNFQKEWKYDVFLSFRGKDTRYVFTRNLYEALSRKGIHTFFDDDDIQSGDEITPTLLTAIQESRIAIIILSPDYASSSFCLDELVHILRCIKANNRLVVPVFYDVDPCDVRHQRNKFKEAMDKHEKRYKDDMNKVQKWKEALHQVANLSGYHFGPGKGYEHMFIANIVKNISKRITRRPALHVADHPVGLKSQVSEVASLLHVESNAGVHMVGIYGIGGMGKTTLAAAVYNLIADHFEGACFLEKVRENSERYGLVHLQNILLSQILGENDINLASSKQGASKIHNRLCRKKVLLVLDDVNEQEQLKAIAGKPEWFGPGSRLIITTRDKHLLTLHGVKRTYQVRGYELGEVTDMLHAHYGSCMKYHIGVLVQKSLIMINRYDWKVEIHDLLEDTGKQIFLEKSPEMPGKRSRLWSCEDIVRVLENNQGTSAIEIIYLEFPFFRRERDEDPMTKEECKDVKVKWDGAAFKEMKNLKTLIIKNGYFSRSPKHLPNSLRVMEWWRYPANCFPYDFHPKKLTILKLPDYLHPIRELNSLSKGLVTLTVLNFDYSKFLKEIPDVASLQNLQAISFVGCRNLVRVDSSVGFLPKLKILKANDCKKLSCFPPAINLPSLETLGLSGCRSLENFPEILREMKHVTSLWLYSTGIKDLSCSFRNLSALSHLDIRESKMCRVPSVVGMMPQLVVFIIEAEGGDNEGKVSGKPEKEGLQLQLQGILTHSLCSPKLESLELNNCELSDGFFPLAVAWFPNLTKLELGGSNFTILPECIQEFCFLWNLNVDECEHLREIRGIPPCLRFFSAINCKSLSHRGTSVLLNQEPHVDSWIHFVMPGRIPRWFEQRSRGPSISFWFRGNHFPGNALLVAILLTDDLHCNPWLIELTPIVTIKDKEFPLRHRTRMEQLFVFDLSSITNSSKNGWNHAQVSYTAITHSVGKCEYHDVQIESIAKEIGMHVRKQKNSSIMQDIRFTDPYKMTGLIIMMMMVSMALPNHKNQPLLLQTRIGLWTLLFLTHTALGTNTLS 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc609g00003 1031 Gene3D - 188 352 IPR027417 -
Stsc609g00003 1031 SUPERFAMILY "Winged helix" DNA-binding domain 358 438 IPR036390 -
Stsc609g00003 1031 Gene3D Ribonuclease Inhibitor 479 644 IPR032675 -
Stsc609g00003 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 374 IPR027417 -
Stsc609g00003 1031 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 191 - -
Stsc609g00003 1031 Pfam NB-ARC domain 206 354 IPR002182 GO:0043531
Stsc609g00003 1031 Coils Coil 128 155 - -
Stsc609g00003 1031 Gene3D - 16 187 IPR035897 -
Stsc609g00003 1031 Pfam TIR domain 22 188 IPR000157 GO:0007165
Stsc609g00003 1031 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 352 IPR044974 GO:0006952
Stsc609g00003 1031 ProSiteProfiles TIR domain profile. 21 189 IPR000157 GO:0007165
Stsc609g00003 1031 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 165 IPR035897 -
Stsc609g00003 1031 PRINTS Disease resistance protein signature 621 637 - -
Stsc609g00003 1031 PRINTS Disease resistance protein signature 225 240 - -
Stsc609g00003 1031 PRINTS Disease resistance protein signature 301 315 - -
Stsc609g00003 1031 Gene3D Ribonuclease Inhibitor 645 837 IPR032675 -
Stsc609g00003 1031 SUPERFAMILY L domain-like 479 820 - -
Stsc609g00003 1031 SMART till_3 22 162 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc609g00003 Stsc-Chr609 7076 11311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc609g00003 374 682 WRKY Transcription Factor Family AT4G12020 32.000 6.65e-34 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc609g00003 - - aip:107644584 776.548