Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60999g00004 ATGCCCTATAATCTACCAGTATCCCTCACCAGAATCAATATTCCATTCCCTTGTGATTGCATCAATGGTGAGTTCTTGGGGCATGTGTTTGAGTACTCAGCTATTGAAGGTGACAACTATGATGCCATTGCAAACATTAGATATTCTGATCTTACCACTGTTGAGGTTTTGCATAGGTTCAACAACTATGATCCAAATCATGTACCTGTTAATGCTAAGGTTAATGTCACAGTCAATTGTTCTTGTGGGAACAGCAGTGTTTCAAAGGATTATGGTTTGTTTGTTACTTACCCTCTTGAGCAAGGTGATACTTTGCTGAAAATTGCAAATGACACTAAACTTGATGCTAAGTTGCTGCAGAGTTACAATCCAGGCGTTAACTTCAGCCAAGGGAGTGGGATAGTTTTCATTCCAGGGAGAGATCAAAATGGAGTCTATGTTCCCTTGTATCCTAGAACAGGTTTAGCTAAGGGTGTTGCTGTTGGAATATCTATAGCTGGAGCAAGTGGGGTTCTGGTATTAGTAATATGTAGTTGTGTTAGACATTTCCAGAAGAAGGAAGAAGAAAAAATGAAATTGCCAACAGAAGATTTTGTATCAAGTTCAACTCAAGATGGATCTAGCAGTGGTGAATATGAAACTTCAGGATCCACTGCTGTTAGTGCTGCTGGCCTACCTGGGATTATGACGGCGAAATCGATGGAATTCTCTTATCAAGAACTAGCCAAGGCTACAAGTAACTTCAGCTCTGATAACAAAATTGGTCAAGGTGGATTTGGAGCTGTCTATTTTGCAGAATTGAGAGGCCAAAAAGCAGCAATTAAGAAGATGGATGTACAAGCATCAACAGAGTTTCTTTCAGAGTTGAAAGTCTTAACACATGTTCATCACTTGAATCTGGTGCGTTTGATCGGATACTGCGTCGAGGGATCTCTTTTCCTTGTGTATGAATACATCGAAAACGGAAACTTAGGCCAATATTTGCATGGCACAGGGAGAAAGCCTCTGGCATGGTCAACAAGGGTGCAAATTGCTCTGGATTCAGCAAGAGGACTTGAATATATACATGAACACACTGTTCCTGTTTATATCCACCGGGATGTGAAACCTGCTAACATATTAATAGATAAAGACTTCCGTGGAAAGGTTGCAGATTTTGGGCTAACTAAACTTAGGGAAGTTGGAAGCTCTTTATCACTTCACACTCGGCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCACAATATGGAGATGTATCTCCAAAAATAGATGTATATGCTTTTGGAGTTGTGCTTTATGAACTTATTTCAGCCAAGAATGCTGTTCTGAAGACAGGTGAAACCCTTGCTGAATCATCAAAGGGCCTTGTAACTTTGTTTGAGGAAGCACTTAATAAGAGTGATCCTTCACAAGCCATTCGCAAATTGGTGGATCCTAGGCTTGGAGAAAACTATCCAATTGACTCAGTTCTCAAGGTTGCAGAACTTGGGAGAGCATGCACAAGAGATAATCCACTACTACGCCCTAGTATGAGATCTGTGGTTGTGGCTCTTATGACACTAATCTCATCATCAACATCCATTATTGAGGAGTGTGATAATGATAATGATGATGATGATTCCTTTGAAAGTCGAACTCTTATAGATCAATTATCGGTCAGGTGA 1671 0.4039 MPYNLPVSLTRINIPFPCDCINGEFLGHVFEYSAIEGDNYDAIANIRYSDLTTVEVLHRFNNYDPNHVPVNAKVNVTVNCSCGNSSVSKDYGLFVTYPLEQGDTLLKIANDTKLDAKLLQSYNPGVNFSQGSGIVFIPGRDQNGVYVPLYPRTGLAKGVAVGISIAGASGVLVLVICSCVRHFQKKEEEKMKLPTEDFVSSSTQDGSSSGEYETSGSTAVSAAGLPGIMTAKSMEFSYQELAKATSNFSSDNKIGQGGFGAVYFAELRGQKAAIKKMDVQASTEFLSELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLGQYLHGTGRKPLAWSTRVQIALDSARGLEYIHEHTVPVYIHRDVKPANILIDKDFRGKVADFGLTKLREVGSSLSLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKNAVLKTGETLAESSKGLVTLFEEALNKSDPSQAIRKLVDPRLGENYPIDSVLKVAELGRACTRDNPLLRPSMRSVVVALMTLISSSTSIIEECDNDNDDDDSFESRTLIDQLSVR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60999g00004 556 FunFam LysM receptor kinase 2 227 318 - -
Stsc60999g00004 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672|GO:0006468
Stsc60999g00004 556 ProSiteProfiles Protein kinase domain profile. 248 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60999g00004 556 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 7 528 IPR044812 GO:0019199|GO:0045087
Stsc60999g00004 556 SMART serkin_6 248 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60999g00004 556 Gene3D Phosphorylase Kinase; domain 1 228 318 - -
Stsc60999g00004 556 Gene3D Transferase(Phosphotransferase) domain 1 319 547 - -
Stsc60999g00004 556 MobiDBLite consensus disorder prediction 196 217 - -
Stsc60999g00004 556 SUPERFAMILY Protein kinase-like (PK-like) 229 520 IPR011009 -
Stsc60999g00004 556 Pfam Protein tyrosine and serine/threonine kinase 251 517 IPR001245 GO:0004672|GO:0006468
Stsc60999g00004 556 ProSitePatterns Protein kinases ATP-binding region signature. 254 276 IPR017441 GO:0005524
Stsc60999g00004 556 MobiDBLite consensus disorder prediction 194 217 - -
Stsc60999g00004 556 FunFam PTI1-like tyrosine-protein kinase 3 319 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60999g00004 Stsc-Chr60999 29734 32778 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60999g00004 10 556 Receptor kinase-like Gene Family AT3G21630 56.341 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc60999g00004 PK_Tyr_Ser-Thr 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60999g00004 - K13429 gmx:100776847 831.247